KEGG   Chondrus crispus (carragheen): CHC_T00005835001
Entry
CHC_T00005835001  CDS       T02916                                 
Name
(RefSeq) hypothetical protein
  KO
K10755  replication factor C subunit 2/4
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03030  DNA replication
ccp03410  Base excision repair
ccp03420  Nucleotide excision repair
ccp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CHC_T00005835001
   03410 Base excision repair
    CHC_T00005835001
   03420 Nucleotide excision repair
    CHC_T00005835001
   03430 Mismatch repair
    CHC_T00005835001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ccp03032]
    CHC_T00005835001
   03036 Chromosome and associated proteins [BR:ccp03036]
    CHC_T00005835001
   03400 DNA repair and recombination proteins [BR:ccp03400]
    CHC_T00005835001
DNA replication proteins [BR:ccp03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    CHC_T00005835001
  DNA Replication Termination Factors
   ELG1-RFC complex
    CHC_T00005835001
Chromosome and associated proteins [BR:ccp03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    CHC_T00005835001
DNA repair and recombination proteins [BR:ccp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     CHC_T00005835001
  Check point factors
   HRAD17(Rad24)-RFC complex
    CHC_T00005835001
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_14 Viral_helicase1 Mg_chelatase AAA_16 RuvB_N AAA_22 AAA_5 ABC_tran AAA_11 bpMoxR nSTAND3 AAA_25 TniB AAA_28 AAA_3 AAA_19 DNAX_ATPase_lid RNA_helicase AAA_18 IstB_IS21 AAA_33 GshA AAA_30 FtsK_SpoIIIE AAA_29 AAA_7 DUF815 ORC-CDC6-like Spore_III_AA MeaB NPHP3_N
Other DBs
NCBI-GeneID: 17325241
NCBI-ProteinID: XP_005717511
UniProt: R7QJQ5
LinkDB
AA seq 327 aa
MQPSTAKPPSTAYELPWVEKYRPQTLDDVVGNEDVLDRLRVVAVNGNMPNLLLAGPPGCG
KTTAIMALARQTLGPQLRNAVLELNASDDRGIDTVRTRIKMFAQKKVTLPPGRHKIVLLD
EADSMTSAAQQALRRTMELHSNTTRFALACNLSSKIIEPIQSRCAVVRFRRLSNEQVAGR
VAHVLKREKAEYDQSGVDAAVFTADGDMRIALNNIQSTFNGFGFVNGKNLNKVCDQPHPK
VVAEFLVLCMEKDIDGALAKVMFLSDQGYSTIDIIQTIFRVAKGMTIDNELTKLNMLRII
GLVHMRMAEGVATPLQLAGLASKLCRA
NT seq 984 nt   +upstreamnt  +downstreamnt
atgcaaccgtcaaccgccaaacccccttctaccgcctatgagcttccctgggtagaaaaa
tatcgaccccaaacgctcgacgacgtcgtcgggaacgaagatgtcctcgaccgtctccgc
gtcgtcgccgtcaacggcaacatgccgaacctgcttctcgcaggcccgccggggtgcggc
aagaccactgcaatcatggccctagcccgccagaccctcggcccccagctgcgcaacgcc
gtccttgagctcaacgcctcggacgatcgcggcatcgacaccgtccgcacgcgcatcaag
atgttcgcccagaaaaaggtaaccttgcctccggggagacataagatcgtccttctggat
gaggccgactccatgacctcggcagcccagcaggcactcagaaggaccatggagctgcac
tccaataccaccaggtttgcactcgcttgtaacctgtcgtcaaagattatcgagccgatt
caaagtcggtgcgccgtcgtccggtttaggaggctttccaatgagcaggttgcaggtaga
gtggcccatgttcttaaaagggagaaggctgagtatgaccagtcgggcgtcgatgccgct
gtttttactgcggatggcgatatgaggattgcgttgaacaacattcagagcaccttcaac
ggcttcggtttcgtcaatgggaagaacttgaataaggtctgcgaccagccgcatcccaaa
gtcgtcgccgagtttctcgtcttgtgcatggaaaaagatattgacggcgccctcgcaaaa
gtcatgtttctctcagatcagggctactccacgatcgatattattcagaccatcttccga
gtcgccaagggtatgacgattgacaatgaactgaccaagctcaatatgctccgcattatt
gggcttgttcacatgaggatggcggaaggggtggccactccattgcagctcgcgggcttg
gcgtcaaagctctgtcgcgcttga

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