Chondrus crispus (carragheen): CHC_T00005835001
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Entry
CHC_T00005835001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K10755
replication factor C subunit 2/4
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03030
DNA replication
ccp03410
Base excision repair
ccp03420
Nucleotide excision repair
ccp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CHC_T00005835001
03410 Base excision repair
CHC_T00005835001
03420 Nucleotide excision repair
CHC_T00005835001
03430 Mismatch repair
CHC_T00005835001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccp03032
]
CHC_T00005835001
03036 Chromosome and associated proteins [BR:
ccp03036
]
CHC_T00005835001
03400 DNA repair and recombination proteins [BR:
ccp03400
]
CHC_T00005835001
DNA replication proteins [BR:
ccp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
CHC_T00005835001
DNA Replication Termination Factors
ELG1-RFC complex
CHC_T00005835001
Chromosome and associated proteins [BR:
ccp03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
CHC_T00005835001
DNA repair and recombination proteins [BR:
ccp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
CHC_T00005835001
Check point factors
HRAD17(Rad24)-RFC complex
CHC_T00005835001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
AAA_14
Viral_helicase1
Mg_chelatase
AAA_16
RuvB_N
AAA_22
AAA_5
ABC_tran
AAA_11
bpMoxR
nSTAND3
AAA_25
TniB
AAA_28
AAA_3
AAA_19
DNAX_ATPase_lid
RNA_helicase
AAA_18
IstB_IS21
AAA_33
GshA
AAA_30
FtsK_SpoIIIE
AAA_29
AAA_7
DUF815
ORC-CDC6-like
Spore_III_AA
MeaB
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
17325241
NCBI-ProteinID:
XP_005717511
UniProt:
R7QJQ5
LinkDB
All DBs
AA seq
327 aa
AA seq
DB search
MQPSTAKPPSTAYELPWVEKYRPQTLDDVVGNEDVLDRLRVVAVNGNMPNLLLAGPPGCG
KTTAIMALARQTLGPQLRNAVLELNASDDRGIDTVRTRIKMFAQKKVTLPPGRHKIVLLD
EADSMTSAAQQALRRTMELHSNTTRFALACNLSSKIIEPIQSRCAVVRFRRLSNEQVAGR
VAHVLKREKAEYDQSGVDAAVFTADGDMRIALNNIQSTFNGFGFVNGKNLNKVCDQPHPK
VVAEFLVLCMEKDIDGALAKVMFLSDQGYSTIDIIQTIFRVAKGMTIDNELTKLNMLRII
GLVHMRMAEGVATPLQLAGLASKLCRA
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccgtcaaccgccaaacccccttctaccgcctatgagcttccctgggtagaaaaa
tatcgaccccaaacgctcgacgacgtcgtcgggaacgaagatgtcctcgaccgtctccgc
gtcgtcgccgtcaacggcaacatgccgaacctgcttctcgcaggcccgccggggtgcggc
aagaccactgcaatcatggccctagcccgccagaccctcggcccccagctgcgcaacgcc
gtccttgagctcaacgcctcggacgatcgcggcatcgacaccgtccgcacgcgcatcaag
atgttcgcccagaaaaaggtaaccttgcctccggggagacataagatcgtccttctggat
gaggccgactccatgacctcggcagcccagcaggcactcagaaggaccatggagctgcac
tccaataccaccaggtttgcactcgcttgtaacctgtcgtcaaagattatcgagccgatt
caaagtcggtgcgccgtcgtccggtttaggaggctttccaatgagcaggttgcaggtaga
gtggcccatgttcttaaaagggagaaggctgagtatgaccagtcgggcgtcgatgccgct
gtttttactgcggatggcgatatgaggattgcgttgaacaacattcagagcaccttcaac
ggcttcggtttcgtcaatgggaagaacttgaataaggtctgcgaccagccgcatcccaaa
gtcgtcgccgagtttctcgtcttgtgcatggaaaaagatattgacggcgccctcgcaaaa
gtcatgtttctctcagatcagggctactccacgatcgatattattcagaccatcttccga
gtcgccaagggtatgacgattgacaatgaactgaccaagctcaatatgctccgcattatt
gggcttgttcacatgaggatggcggaaggggtggccactccattgcagctcgcgggcttg
gcgtcaaagctctgtcgcgcttga
DBGET
integrated database retrieval system