Chondrus crispus (carragheen): CHC_T00005899001
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Entry
CHC_T00005899001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03018
RNA degradation
ccp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CHC_T00005899001
09123 Folding, sorting and degradation
03018 RNA degradation
CHC_T00005899001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccp03019
]
CHC_T00005899001
03041 Spliceosome [BR:
ccp03041
]
CHC_T00005899001
Messenger RNA biogenesis [BR:
ccp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CHC_T00005899001
mRNA degradation factors
5'-3' decay
Lsm complex
CHC_T00005899001
Spliceosome [BR:
ccp03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CHC_T00005899001
Complex C
U2 snRNP components
CHC_T00005899001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Hfq
Motif
Other DBs
NCBI-GeneID:
17325330
NCBI-ProteinID:
XP_005717613
UniProt:
R7QGU5
LinkDB
All DBs
AA seq
97 aa
AA seq
DB search
MLFFSFFKTLESKLVTIELKNDLKIKGVLHSVDQYLNCKLQQVEVLNAERYPHLLAVSSV
FIRGSVVRYVHINPSDVNVPLLQDASRREYGEGRNAP
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atgctcttcttctccttcttcaagacgctcgagtccaagctggtcaccatcgagctcaag
aacgacctcaagatcaagggcgtgctgcacagcgtcgaccagtacctcaactgcaagctg
cagcaagtcgaggttctcaacgccgagcgctacccgcacctcctggctgtctcctccgtc
tttatccgcggctccgtcgtgcgctacgtccacatcaacccgtccgacgtcaacgtgccc
ctcctgcaggacgccagccggagagagtatggcgaggggcgcaacgccccctag
DBGET
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