KEGG   Chondrus crispus (carragheen): CHC_T00005899001
Entry
CHC_T00005899001  CDS       T02916                                 
Name
(RefSeq) hypothetical protein
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03018  RNA degradation
ccp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CHC_T00005899001
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CHC_T00005899001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccp03019]
    CHC_T00005899001
   03041 Spliceosome [BR:ccp03041]
    CHC_T00005899001
Messenger RNA biogenesis [BR:ccp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CHC_T00005899001
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CHC_T00005899001
Spliceosome [BR:ccp03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    CHC_T00005899001
 Complex C
  U2 snRNP components
    CHC_T00005899001
SSDB
Motif
Pfam: LSM SM-ATX Hfq
Other DBs
NCBI-GeneID: 17325330
NCBI-ProteinID: XP_005717613
UniProt: R7QGU5
LinkDB
AA seq 97 aa
MLFFSFFKTLESKLVTIELKNDLKIKGVLHSVDQYLNCKLQQVEVLNAERYPHLLAVSSV
FIRGSVVRYVHINPSDVNVPLLQDASRREYGEGRNAP
NT seq 294 nt   +upstreamnt  +downstreamnt
atgctcttcttctccttcttcaagacgctcgagtccaagctggtcaccatcgagctcaag
aacgacctcaagatcaagggcgtgctgcacagcgtcgaccagtacctcaactgcaagctg
cagcaagtcgaggttctcaacgccgagcgctacccgcacctcctggctgtctcctccgtc
tttatccgcggctccgtcgtgcgctacgtccacatcaacccgtccgacgtcaacgtgccc
ctcctgcaggacgccagccggagagagtatggcgaggggcgcaacgccccctag

DBGET integrated database retrieval system