KEGG   Chondrus crispus (carragheen): CHC_T00005968001
Entry
CHC_T00005968001  CDS       T02916                                 
Name
(RefSeq) hypothetical protein
  KO
K10752  histone-binding protein RBBP4
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03082  ATP-dependent chromatin remodeling
ccp03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    CHC_T00005968001
   03083 Polycomb repressive complex
    CHC_T00005968001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ccp03036]
    CHC_T00005968001
Chromosome and associated proteins [BR:ccp03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     CHC_T00005968001
  Histone modification proteins
   HAT complexes
    HATB complex
     CHC_T00005968001
   HDAC complexes
    Sin3A-HDAC complex
     CHC_T00005968001
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     CHC_T00005968001
    PRC2.2
     CHC_T00005968001
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     CHC_T00005968001
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    CHC_T00005968001
  Chromatin remodeling factors
   NuRD complex
    CHC_T00005968001
   NuRF complex
    CHC_T00005968001
   NuRF complex (fruit fly)
    CHC_T00005968001
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EIPR1 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WDR55 Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_EML WD40_WDHD1_1st CAF1C_H4-bd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st EIF3I Beta-prop_WDR35_TULP_N WD40_RFWD3
Other DBs
NCBI-GeneID: 17325555
NCBI-ProteinID: XP_005717839
UniProt: R7QKR8
LinkDB
AA seq 476 aa
MPTPVQPVGSLNADARFEIWKDQHVPLLYDWLSSRNLVWPHEALRWGALSPDENRSRERT
VISNGAPSITRALYLAERTGPSKNDPNTLLHFDVKVTPELSCKPQDIAKPWLNEAVVLER
ADQMSTRSFWLRKRIIHPGEVNRIRLAAPGVVITHTDNPHLFVWDFNMQPARAKDEMTAS
VPTVTLVGHHDDADYALDVAPPPNLDSDAGQADTWIVSGGRDCSVLVWCLKDYQSMGPEL
MPRARMVGGRNMSPDLGHTNIVEDVSFNSHDRNIVVSVGRDSAMMLWDTRTTARPTSTVR
KAHVGDINCCDAGGTDQYLIITGGSDHLIKVWDRRYLTNALGERKPIKTLHGHSNQVTNV
MWNKYVPATLASGGEDGQVLLWNIKETDRRPAFSSGLYSVSPELMFRHVGHTQSPSKIVD
FEWHPSESDPWCIASLSETVGEGGSTVQIWRISDLIYREKEEVAADLRQHARSRVY
NT seq 1431 nt   +upstreamnt  +downstreamnt
atgccaacgcctgtccaacctgtgggttctctgaatgcagatgcgcgcttcgaaatatgg
aaagaccaacacgtacccttgctctacgactggctttcctctcgcaacttggtctggcca
cacgaggcgttgcgttggggagccttgagcccagatgagaataggtcaagagaacgcacc
gttataagcaatggcgccccgtctatcacgcgcgccctgtatttagcggaacggacagga
ccttccaagaacgatcccaataccctcctgcacttcgatgtcaaggtcaccccagagctt
tcgtgcaaaccccaagacatagccaaaccatggcttaatgaggctgttgtcttagagagg
gccgatcaaatgtcgacaagaagcttctggcttcgcaagcgaattatccaccccggcgaa
gtcaatcggatacgcctcgccgcacctggcgtcgttatcacgcataccgataatcctcat
ttgttcgtttgggacttcaatatgcaaccagcaagagcgaaggacgaaatgacagctagc
gtgcccactgtcacactagttggacatcatgacgatgcagattatgccctagatgtcgct
ccacctccaaacctggacagcgatgctggtcaggcggatacatggattgtgagtggcggc
agggattgctctgttcttgtgtggtgccttaaagattaccaaagcatgggaccagagttg
atgccccgtgcgcgtatggtaggaggacgcaacatgtcaccagatttgggacacaccaat
atcgtagaagacgtcagtttcaattcacatgaccgaaacatcgtggtctcagttgggcgg
gactcggcaatgatgttgtgggatacgcgaacaaccgctaggccgacaagcacggttcgg
aaagctcacgtcggagatatcaactgctgtgatgcaggtggaacagatcagtacctcatc
atcaccggcggtagtgatcatttaatcaaagtgtgggatagacgctacctgacaaatgca
cttggggagagaaagcctattaaaacacttcatggccattcgaatcaagtgacaaatgtt
atgtggaacaagtacgttccggccactttggcatccggcggtgaagacgggcaagttcta
ctgtggaacatcaaggaaacagatcgtcggccggcattctcaagtggcttgtattcggtc
agccccgaattgatgttcagacatgtcggacacacccagtctccctcaaagatcgtcgat
tttgagtggcatcccagcgagtctgacccctggtgcatagcgtcactcagcgaaacagtt
ggggaaggaggatctacggtgcaaatatggaggatatctgatttgatttatcgggagaag
gaggaagttgctgctgaccttcgacagcatgctcgatctagagtctactaa

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