KEGG   Chondrus crispus (carragheen): CHC_T00006659001
Entry
CHC_T00006659001  CDS       T02916                                 
Name
(RefSeq) hypothetical protein
  KO
K03124  transcription initiation factor TFIIB
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    CHC_T00006659001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccp03021]
    CHC_T00006659001
Transcription machinery [BR:ccp03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIB
     CHC_T00006659001
 Prokaryotic type
  Archaeal type
    TFB
     CHC_T00006659001
SSDB
Motif
Pfam: TFIIB Zn_Ribbon_TF Cyclin_N OpuAC Ribosomal_S27e Zn_ribbon_PaaD TPR-S Pox_TAA1
Other DBs
NCBI-GeneID: 17317593
NCBI-ProteinID: XP_005709868
UniProt: R7QNA6
LinkDB
AA seq 328 aa
MERELPEECPECESDDIIEDWAHGNAVCRSCGLVVQDRLLDLGTEWRTFTAEEGDDPNRA
GPAANPLLEGEQGTSIGNGARGGGQLNKALNRAQQRNAISDADKVMIAVMGRIDRFCERL
SLTGSISKRAKELFKRYRDHLTLKKTASNPDVFTRSRPLRDEEVSEIIASSLFIACRNEK
AARTYKEICGLTKVPKKNVGATVKKMELVLEGAKTTYVRGTDDFVTRFCNLLDLPRDVIN
AADAVANALQNQEGVYGKTYTTVAASSIYVVTQLSDDKHVRTAKEIADVTGVADVTIKTT
YRLIYPYIKKVLPKDFKPAKPLSRLPPP
NT seq 987 nt   +upstreamnt  +downstreamnt
atggagcgcgagctgccggaagagtgccccgagtgcgaaagcgacgacatcatcgaggac
tgggcccacgggaacgccgtctgtcgctcctgcggcctcgtcgtccaggaccgtttgctc
gacctcggcaccgagtggcgcaccttcaccgctgaggaaggcgacgaccccaaccgcgcc
ggacccgcggctaacccccttctagagggcgagcaggggaccagtattgggaatggtgct
aggggaggggggcagcttaataaggcactcaatcgtgctcagcagagaaatgccatatct
gacgccgataaagtcatgattgccgtcatgggtaggattgataggttctgcgagcgtctt
tcattgacggggtccatctcgaagagggcaaaggaattgtttaagaggtaccgcgaccat
ttgaccctcaagaagaccgcgtccaatccggatgtcttcacgagatcccgcccgttgcga
gatgaggaagtcagcgagattattgcctccagcttattcattgcatgtaggaatgagaag
gccgcgcgtacgtataaggagatctgcggcttgacaaaggtcccgaagaagaacgtgggc
gccacggtcaagaagatggagctcgtgctggagggcgcgaagaccacctacgtcaggggg
actgatgactttgttactcgattctgcaatctcctcgacttgccgagggatgttattaat
gccgccgatgccgtcgccaacgcgctacagaaccaggagggcgtatacgggaagacgtac
accaccgtcgccgcttcctcgatttatgttgtcacccagctcagcgacgataagcacgta
cgcacggcgaaggagatcgccgacgttacgggcgtggccgatgtcaccatcaagaccacg
taccgcctcatctatccttatattaagaaagtcctgcccaaggatttcaagcctgcaaaa
ccgctgtcgcgacttccgccgccctaa

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