Chondrus crispus (carragheen): CHC_T00006787001
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Entry
CHC_T00006787001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
ccp
Chondrus crispus (carragheen)
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccp03041
]
CHC_T00006787001
03009 Ribosome biogenesis [BR:
ccp03009
]
CHC_T00006787001
Enzymes [BR:
ccp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHC_T00006787001
Spliceosome [BR:
ccp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
CHC_T00006787001
Ribosome biogenesis [BR:
ccp03009
]
Eukaryotic type
Pre-60S particles
Helicases
CHC_T00006787001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
17317719
NCBI-ProteinID:
XP_005710039
UniProt:
R7QQT0
LinkDB
All DBs
AA seq
740 aa
AA seq
DB search
MRRSCSSEGEAGGTNFLPLKNSPHGLADVHSAETWTLAFSVGVASAGTDLDSVVENVARE
ASDRANAAAPPPLGGAEADGIGDAGVAMAMRVAKGGGAGSIGLAMQEDPDGFVRTVEAAP
DSDFDDDASALEFGSEDGDDGDDVNPAKPFFEPERPAGWDLSDARAEAAKPRPFQTSIDE
KIKTHQKGLTEPPKEGADEEKGELRKRKRGGPEAVADVEAEKGPKKGKKRLRKERAAAKN
FVELHLSRALQKAVEQLEWHEPTPIQSRAIPYILAGRDICGSAVTGSGKTGAFVLPVLER
LLQAGVDNVTRVVMLLPTRELAAQCHAVIKNLAKYTSIRAALAVGGLSNKTQEAALRTRP
HILVATPGRLIDHIRNAHGFSLDDIEVLIMDEADRLLEMGFQAEVEEIVRNTRAAGRQTL
LFSATMTDDLKGLIKLSLQNPINLAVDPVFDVATTLAQEFLKSAELHGNLTQAQRLAALD
TFRDGTVDFLLCTDLAARGLDIAGVETVINYDLPGEVKEYVHRVGRTARAGKQGRACSIV
CSGNNDERRLLKGITKRAQGQLSARIVPPSAIGKWRAWIDSLEPAAKAVLKEEKQEKEMR
LAEMELSKASNILKHSDDIYSRPARTWFQNEEQKRESKVNARMAKGLGPSLEEKVQAEKK
KQKKLARERQTRDRESAELDQGHSKQRADARNAKKNNRLRNWSSVGYGLQARYAGRHVGT
NCRGTKFRRLTWWACAARLV
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgttcctgcagctcggagggcgaggcgggcggcacgaacttcttgccattgaag
aactcgccccacggcttggccgacgtccacagcgcggagacgtggaccttggcgttctcc
gtcggcgtggccagcgccggcactgacttggacagcgtcgtggagaatgtggctagagag
gcgagcgatcgcgcaaatgccgccgcgccgcccccgctgggaggcgccgaagcggacggc
atcggggacgcgggggtggccatggcgatgcgtgtggccaaagggggcggtgcgggaagt
attggactcgccatgcaagaagaccctgatgggtttgtccgcacggtagaagccgccccg
gattctgactttgatgatgacgcctctgcgctcgagtttggcagcgaagacggcgatgac
ggcgatgacgtaaaccctgccaagcccttcttcgagcccgagagacccgctggatgggac
ttgtccgacgcccgtgcagaggccgcaaagccgaggccgtttcagacttccatcgatgaa
aagataaagacccatcagaaggggctcacagagccgccaaaggaaggcgcggacgaggaa
aagggcgagctgcgaaaacggaaaagggggggcccagaggccgtcgcggacgtcgaagcg
gaaaagggccccaagaagggaaagaagagactgcgtaaggagcgcgccgctgcgaagaac
tttgtcgaattgcatctttcacgggccttgcagaaggctgtggagcagctggagtggcat
gagcctactcccatccagtcgcgcgcaattccctacatactggcggggcgtgatatatgc
ggaagcgccgtcacggggtctggcaagacgggagccttcgtgctcccggttctcgagcgc
ctcctgcaggccggcgtggacaacgtcacgcgcgtcgtcatgctgctgcccacgcgcgag
ctagccgcgcagtgccacgccgtcatcaaaaacctggccaagtacacctcgatccgcgcg
gcgctcgcggtgggcggcctgtcgaacaagacgcaggaagctgcgctacgcacgcgcccg
cacatcctcgtcgccacacccggcaggctgatcgaccacatccgcaacgctcacggcttc
tcgctcgatgacatcgaggtcctcatcatggatgaggctgaccgcttgttggagatgggc
ttccaggcagaggtcgaagaaatcgtccgcaacacacgtgcagcagggagacagaccctc
ttgttttcggcaaccatgacggatgacttgaaggggcttatcaagctgtcgctgcagaat
ccgattaacttggctgtggatcccgtttttgatgttgccaccacgctcgcacaggagttt
ttgaagtctgcagagttacatggcaatctcacacaagcgcagcggctcgcagcgttagat
acgttccgagatggcacggttgattttctgctctgcaccgatttggcagcgaggggcttg
gatattgcgggtgtagagacggtgataaactatgacctgccgggcgaagtgaaagagtat
gtgcaccgggtggggcgcacagcgcgagcggggaagcagggccgtgcttgcagcattgta
tgcagcggaaataatgatgaacggaggctgctcaaggggattacaaagcgcgctcaaggc
cagctgtcagcacgcattgtcccaccatctgcgatagggaagtggcgcgcatggatcgat
agcctggagccggctgccaaggctgtgctgaaggaagaaaagcaagagaaggaaatgcga
cttgcggagatggagctgagtaaggcgagcaacattctcaaacattcggacgacatttac
agtcgacctgctcggacatggttccagaatgaagaacagaagagggaaagcaaggtcaac
gctcgcatggcaaaggggcttgggccgagtctagaggagaaagttcaggctgagaaaaag
aagcaaaagaagctggcaagagaaaggcagacccgcgatcgggagagtgcggaactggat
cagggccattccaagcagcgggcggatgcaaggaatgcgaagaagaataaccggttaaga
aattggtcctcggttggatatggcctgcaagcaaggtatgccgggaggcatgttggtacg
aactgtcgagggactaaatttcgaaggctaacatggtgggcttgtgctgcaaggctagta
tga
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