Chondrus crispus (carragheen): CHC_T00006828001
Help
Entry
CHC_T00006828001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
ccp
Chondrus crispus (carragheen)
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccp03016
]
CHC_T00006828001
Enzymes [BR:
ccp01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
CHC_T00006828001
Transfer RNA biogenesis [BR:
ccp03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
CHC_T00006828001
Prokaryotic type
CHC_T00006828001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
17317655
NCBI-ProteinID:
XP_005709946
UniProt:
R7QMB7
LinkDB
All DBs
AA seq
375 aa
AA seq
DB search
MFILAPPASLAFRTRHALHRKVATVRWRACTTPAINSRPRSETRNRDVAKRKVALLVAYD
GAKYHGLQRNAGVDTVSDVLETALHGAGAISDDNLGFLPKIKWQVAARTDRGVSAAGNVV
SAKLLFNKDEQESGAAFELTTARVNAELPDHVRLFGIKYTTSSFSAKASCGERWYEYMLP
LSALRGHKSLAQFRDTLNLFEGSHRFHNYTVGQDHTIPPRQQAMRYITKATCDMEPVHLD
SPLLTDHAQSHWVRIYVRGQSFMLHQIRKMVSAAVLIHNSDAPEDTVQKSFEQNVLINVP
PAPAVGLFLDCCHFRWYNERHKERLPEPLSLHSFESAREKFKHEHIFPSIARRAAEDDAL
EAYFRTAEKHPIQFS
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgtttattctcgcgccccccgcatcgctcgcttttcgtacaaggcatgcactacaccgg
aaggttgccaccgtcaggtggcgtgcttgcacaacgcccgccatcaattcgcgcccgagg
tctgaaacgaggaatcgcgacgtcgctaagagaaaggtcgccttgttggtcgcctacgac
ggagcgaaataccacggcctgcagcggaatgccggcgttgacacagtttcagatgtccta
gaaaccgctctgcatggcgcaggcgccatctccgatgacaacctcggctttctgccaaag
ataaagtggcaagtcgcggcccgcacggatcgcggcgtcagcgccgcggggaacgtcgtg
tccgcaaaacttcttttcaacaaggatgaacaggaaagcggcgctgcctttgagctgacc
accgcgcgcgtcaacgccgagctccccgaccatgtgcgactgttcggcatcaagtacacg
accagcagcttttcggcaaaagcgtcttgcggagagcgctggtacgaatacatgttgccc
ttgtccgctttgcgtggtcacaagtcactcgcacaatttcgtgacactctcaacctcttt
gaagggtctcatcgttttcacaactacacagtcggccaggatcacaccattcctccgaga
caacaggctatgcgctacatcacaaaggctacctgtgacatggagccggtccatcttgat
agtcctttgctgaccgatcacgcacaatcacactgggtccgaatatatgtaagaggtcaa
agctttatgctgcatcaaattcgcaaaatggtgagcgcggcagtactcattcacaactcc
gatgcccccgaggataccgtccaaaaatcctttgaacaaaacgtattaatcaatgtgccc
ccggctccagctgtaggccttttccttgactgctgtcacttccggtggtacaacgaacga
cacaaggagcggcttccagaacctctctcacttcacagttttgagtccgcccgcgaaaag
ttcaagcatgaacatatctttccttcaattgctcgcagggccgccgaagacgatgcttta
gaagcatactttcgcacagcagagaaacatcccattcagttttcataa
DBGET
integrated database retrieval system
