Chondrus crispus (carragheen): CHC_T00006922001
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Entry
CHC_T00006922001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K08737
DNA mismatch repair protein MSH6
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
CHC_T00006922001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccp03400
]
CHC_T00006922001
DNA repair and recombination proteins [BR:
ccp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
CHC_T00006922001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_I
MutS_III
MutS_IV
MutS_II
nSTAND3
Motif
Other DBs
NCBI-GeneID:
17317985
NCBI-ProteinID:
XP_005710259
UniProt:
R7QRI0
LinkDB
All DBs
AA seq
953 aa
AA seq
DB search
MSKPRRDARRKLGALDSQGRVIGKDENNWCERNSWTVDIRDSQKRKPNHPNYDKTTLFVP
PEMLREKTKGSKKGPLTPFQRQFWAIKSANYDVIIFFKKGKFYELYDVDADIGHQELGLN
FTRGGRVDMRCCGVPEQSFDKHCARLIDLGYKVGRVEQTETANAAEKRKNSGAGNQSTVC
HRSLVRILTKATVTDEGLLRDHRARYVLSILEELNDSTPSRKIGVCYVDVASGNISIGEF
MDDFRLAQTERLVTFLRPHEIITNLSAASQRLAGILKWAANSNEAEIIETSTRRGFSSMT
SSWLSTYFTSQKSQCELKRVRKHLDDHALCKEVFGAMASHLKSLIIDKETLSLGNYHLFS
TTFSPNGDSKYLRIDAPTMQNLEILSSCNDGSERGTLLSFVDRARTPAGRRLLRKWIAEP
LVSSTDINDRLDAIGDIHILEDSSEEAALMEVLKHLKTKKDLERALPKGFVAVLRGLQDC
LEAVDTLREVMDKLSPKSKRLRWLYSPGCGVSKGARDKLNYFLGEAFDLRAAEVAGEILP
NRGAVPLYDECRDVLKSAESELSSQLIKWRQKLGDNSIKFYHRGKEPFQLEVKLTTLKGK
TPNEFEVVSEAKAVKRFYTSEIRRLIRKHIEASEAHEIASASVVRDMIGQFDAEYDIWAA
ITRVSAELDALIGLAATSRGQGNGPMCRPTILPKCHLQAEFHAVGLRHPTLAAQSDSFVP
NDVYLGGEQKPDVMVLTGPNAGGKSTLARQIAIGAILAQMGCYVPAESLRIRPFEEIFVR
MGASDDLARGRSTFMVEMEEVGHILNNATSRSLIIADEVGRGTSTHDGYAVAYASLKHIV
NMNKSLTVFSTHYSHLGENIVSLAALYEMAAVINEKTKEITFLYKLRNGSSGDSRGIYCA
RVAGISEAIASNAERASMLFYHSLASRLTSTNFQKISKALEGDDKKATEVLQS
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaccacgtcgagatgctcgccgcaagctcggcgccctcgacagccaaggaaga
gttattggtaaggacgaaaacaattggtgcgaaaggaattcgtggactgtggatatccga
gactctcaaaagcgaaaacccaatcatcccaactacgacaaaacaactctcttcgtccca
ccagaaatgctgagggagaagaccaagggctccaagaaaggccctctcacgccgtttcaa
aggcagttttgggctatcaaaagcgcaaactatgacgtcatcattttctttaagaaagga
aagttctacgaattgtacgacgtggacgctgatattggtcaccaggagctcggattgaac
tttacccgaggtggaagggttgacatgaggtgctgcggggtacccgaacagagctttgat
aagcactgtgcgcgtttaattgatctcgggtacaaagtaggtcgggtagaacagacagag
acagcgaatgcagcagaaaagaggaagaactctggagccggaaaccagtctacagtgtgc
catcgcagtctcgtccgtatcttgacgaaagcgactgtcactgacgaggggttattacgc
gatcaccgagctaggtatgttttatccatactggaagaattgaacgattcaacaccatcg
cgaaaaatcggggtttgctatgtagatgtcgcgagcggcaacatcagcatcggcgagttc
atggatgacttccggctcgcccagacagaacgccttgtgacattcctgcgacctcacgaa
attatcaccaatctctccgctgcgagtcaaaggctggctgggattctgaaatgggccgct
aacagtaatgaagctgagatcatcgagaccagcacaagacgagggttttcttcaatgaca
tcgtcatggttgagtacttacttcacgagccagaaaagccaatgcgagctaaaacgggtg
cgcaaacaccttgacgaccacgcactttgcaaagaggtttttggagcaatggcatcccat
ttaaaatcacttatcatcgacaaagaaacgctatctcttggaaactatcatcttttttca
actaccttttctcctaatggagactcaaagtacctgcgaattgatgctccgacgatgcag
aatcttgaaatattgtcgtcctgtaatgacggctcggaacgagggactttgctttccttt
gtggatcgagctcgaactccggcaggtcgccgcctacttcgaaaatggatagcagaacct
ctcgtatcttctactgatatcaacgataggcttgatgcaataggcgatatacacatatta
gaagactcctcggaagaggcggccctaatggaagtcttgaaacatctgaagacgaagaaa
gatttagagcgtgccctgccaaaagggtttgtcgctgttcttcgtggccttcaagattgt
ctggaagccgtggacactttacgcgaggtcatggacaagctctctcctaagtctaaaagg
ctccggtggttgtactcacccgggtgcggcgtctcgaagggagctcgggacaaactgaac
tactttctcggtgaagctttcgacctccgcgccgctgaagttgctggagaaattcttccc
aatcgaggagcagttccgctgtacgatgaatgtcgggatgtgctaaagagtgcagaatcg
gagttgtctagtcagttaatcaagtggcgacagaagctcggggacaactctatcaagttc
tatcatcgtgggaaggagccatttcaactggaagtgaaacttacgacattgaaggggaaa
acaccaaatgaattcgaggttgtctcagaagctaaggcagtcaagcgtttctacacatca
gagattagacgccttattcgaaagcacatcgaagcctcggaagcccatgaaattgcgagc
gcatctgtagttcgggatatgatcggtcagtttgacgctgaatatgatatatgggctgca
ataactcgggtgagtgctgagttagatgcactgataggtttggcggctacgagccgtggg
caaggaaatggtccgatgtgtcgtccgacgattctgccaaagtgtcatctgcaagcagag
tttcatgccgtaggcttgcgccatccaaccttagcagctcagtcggactcctttgttccc
aacgacgtatacctcggaggtgagcagaaaccagatgttatggtcctaacaggcccaaat
gcaggaggaaagtcgaccctggcgcgacaaattgcaataggagccattttggcgcaaatg
ggatgctacgtaccagcagaatccttacgtattagaccatttgaagaaatctttgtaaga
atgggggcaagcgatgatcttgctagaggtcgatctacatttatggtggaaatggaggag
gttgggcacattttgaacaacgccacgtcacggtctctcatcatcgcagatgaagttggg
cgaggcacttcaacacacgatggctatgctgtggcgtacgccagtctgaaacacattgtg
aatatgaacaagtcgctgacagtattttccactcattactctcatctcggagagaacatt
gtttctttagccgccctgtatgaaatggcagctgttattaacgagaagacgaaggagatt
acttttctatacaaactgcggaacggctcaagcggtgattctcgtggtatctattgcgca
agagttgccggtatttctgaagccattgcgtcgaatgcagagcgcgcttctatgttgttt
taccattcgcttgcatcaaggttgactagtacaaattttcagaagataagcaaagccctg
gagggtgacgacaagaaagcaacagaagtgcttcagtcgtag
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