Chondrus crispus (carragheen): CHC_T00006986001
Help
Entry
CHC_T00006986001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHC_T00006986001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccp03019
]
CHC_T00006986001
Messenger RNA biogenesis [BR:
ccp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CHC_T00006986001
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CHC_T00006986001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
Motif
Other DBs
NCBI-GeneID:
17318122
NCBI-ProteinID:
XP_005710407
UniProt:
R7QQT9
LinkDB
All DBs
AA seq
634 aa
AA seq
DB search
MASRKLQGEIDRVLKRVDEGVGVFEQIWDKVYSATTTAQKEKYEGDLKKEIKKLQRLRDQ
IKTWQGDSSIKDKSKLDSNRKLIEEKMEKFKICEKETKTKAFSKEGLAQDRTDPQQKAKA
AVGNWVKDAISALQEQSDEMEAEIETLNSGKRKKRSEENPRVSDLKEHISKHEFHVGMLE
RVLRAVYNDGITPEETEDLKESVEYYIDSNQDPDFYEDDEMYDLLNLDSVPALSAANSKK
SSKHGDRDDDTSSTSNGANSSRDKKGPSSPRNGKNGRGTSSASHAASKSSATASAAGSRA
MSPKTTRGSDRSPPSSATHSPRSSSGVASALDATGKNPPLLSSVVKGATAVQSGANSKTT
LPAADPVVVDSRHVSGQTQLPDVVVRQGPVIDGTEIAPNPETDGASAMAHAADDPQHLEG
VRGSAVGPKARIIQRDGHANTRQAKLAAMDPTLAEVEGAMSFMPETPTEASKQSLSTAAP
KQNPSTRNLGNGTAAPAAAAPQNPVATPPSFPSVPAPVFDSREVFERFKPDTLFFIFYYQ
QGTYQQYLAARELKRQGWRFHKKYLTWFQRHDEPKMSTDEYETGTFIYFDYANVVVQGKG
SGWCQRIKSEFVFEYRFLEDELKETDDDVGTSFT
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgaggaaactacagggcgagatcgaccgggttctaaaaagagtggatgagggc
gtcggcgtcttcgaacagatttgggataaggtctattcggccactactacggcccagaag
gagaaatatgagggcgacttgaagaaggagatcaagaaactccagcgcttgcgcgatcaa
attaagacatggcaaggggatagctccattaaggataaatcaaagctggattccaacagg
aagcttattgaggagaagatggaaaagtttaagatttgtgaaaaggaaaccaagacaaag
gctttctcaaaagaagggctggctcaggacaggacagatccacaacagaaggccaaagca
gccgtgggaaactgggtcaaggatgctatttccgctttacaggaacagtccgatgagatg
gaggccgaaattgagactctcaactcgggcaagcgaaaaaagaggtcggaggaaaaccct
cgtgtatccgacttgaaagagcacatctctaagcatgagtttcatgtcggcatgctcgag
cgagtattaagagctgtctacaacgatggcatcaccccggaagaaacagaggacctcaaa
gagagcgttgaatattacattgacagcaaccaggaccccgacttctacgaagacgacgaa
atgtacgaccttcttaacctggattctgtcccagctctatcagcggctaattccaaaaag
tcatccaaacacggggaccgcgacgatgatacctccagtacatccaacggtgccaattcg
tcgagagacaagaaaggcccatcatcaccacgaaacggcaagaatggccgcggcacctct
tccgcatcacatgctgcctcaaaatccagtgctaccgcttcggccgcaggctctcgtgcc
atgtcacccaagactactagaggaagcgaccgctcgcctccctcgtccgctacacactca
ccgcgcagctctagtggtgtagcatcggctctcgacgcgactggaaaaaatccccctttg
ttgagcagcgtcgtcaaaggtgccactgcggtacagtctggcgcaaactccaagacaacc
cttccagctgccgatccggtcgtcgtcgactcgcgccacgtttctgggcaaacgcagctg
cctgatgttgtggtcagacaaggaccagtcatcgatggcacagaaattgctcctaatccg
gagaccgatggggcgagtgccatggcacatgcagccgacgacccacagcatctggaaggg
gttcgtgggtcggcggtaggtccaaaagcaaggatcattcaaagggatgggcatgccaac
acaagacaggctaaactagccgcgatggatccgacactcgcagaagttgaaggggctatg
tcgttcatgccagaaaccccaacagaagcatcgaaacaaagcttgtcaacggcagctccc
aagcagaacccatcaacgcgaaatcttggaaacggcaccgcagcacctgcggcggctgct
ccgcaaaacccagtcgctactcctccgagctttccatctgtgccggctccggtgtttgac
agcagagaagtgttcgaacgattcaaaccagacactctattcttcatcttctactaccaa
caaggaacgtaccaacaatacctggcagccagggaactgaaaagacaaggatggcggttt
cacaaaaagtatctgacctggttccagcgccatgatgaaccgaagatgtcaacggatgaa
tacgaaacgggtactttcatctattttgactatgcaaacgtggttgtacaaggcaaaggg
tccgggtggtgtcaacggatcaagtccgagtttgtgtttgaatatcgcttcctggaagac
gaactcaaggagacagatgatgatgtcggcacgtctttcacatga
DBGET
integrated database retrieval system
