Chondrus crispus (carragheen): CHC_T00007205001
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Entry
CHC_T00007205001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03030
DNA replication
ccp03410
Base excision repair
ccp03420
Nucleotide excision repair
ccp03430
Mismatch repair
ccp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CHC_T00007205001
03410 Base excision repair
CHC_T00007205001
03420 Nucleotide excision repair
CHC_T00007205001
03430 Mismatch repair
CHC_T00007205001
03440 Homologous recombination
CHC_T00007205001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccp03032
]
CHC_T00007205001
03400 DNA repair and recombination proteins [BR:
ccp03400
]
CHC_T00007205001
Enzymes [BR:
ccp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CHC_T00007205001
DNA replication proteins [BR:
ccp03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
CHC_T00007205001
DNA repair and recombination proteins [BR:
ccp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
CHC_T00007205001
MMR (mismatch excision repair)
DNA polymerase delta complex
CHC_T00007205001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
divDNApol
POL3_N
DNA_pol_B_2
Motif
Other DBs
NCBI-GeneID:
17318475
NCBI-ProteinID:
XP_005710748
UniProt:
R7QQQ5
LinkDB
All DBs
AA seq
971 aa
AA seq
DB search
MFGLTEGGSSVLVRVHHFYHYFYLPVTDGIQPEALAEAINRRLWNDKTVPRDRTVVTNVE
ITTKRSIMYFIPGDPEVKFYKITLLNPRHTKDVARILQRGGLSVKKPNDVTAKLPELPTF
ESTLDYLLRFMIEVGLVGCSWLTLPAGKYTITEHKKSLLQVEIDVHANDIIAHNPEGKWL
RTAPLRRLSFDIECAGRKGIFPEPEHDKVIQIANYVWDHGHKKPIAQVVFTLKSCAAIVG
ADVVSYENEEELLSAWARFVRLTDPDILTGYNIVNFDLPYLLDRAAQLKVADFPLLGRMI
GQPTTMRKTRMSSSAFGTHESHAFSMHGRVIFDMLQLITREYKLRSYSLNSVSAEFLGQQ
KEDVHYSIIGDLQRGDEQTRRRLAVYCLKDALLPVRLMDKLMSLTNYMEMARVTGIPLGW
LVSRGHMIKVVSLLHRKSHLVDLLIPDIKRSGPEGGGGDGPQFEGATVIKPEKGYYKDPI
ATLDFASLYPSIIMAHNLCYSTLVRPVHLAHMKPEDLSKSPSGASFVKRSVKKGILTKIL
EELLAARKQAKKDLKAAKDPFLQSVLNGRQLALKISANAVYGFTGASVGKLPCMDISAST
TAYGRQMIDNTRLEVEKRYKGATVIYGDTDSVMIKFGNGKSLEECMRLGEEAAEAISSIF
PKPVKLEFEKCYYPYLLISKKRYAGLLWTNTEKYDKMDCKGIEAVRRDNCRLVANVISSV
LEFLLKKRDLQQAISMVKKVISDLLQNKIDVSLLVVSKSLTKTDYENKQAHVVLAEKLRK
RDPGTAPAIGDRVPYVITKGRKNEPAYSRAEDPLYVLERNIPIDNNYYLENMLRKPLERI
FEPVMKSSVNSLFVGEHTRTISVVTPKKGGMAKYTKVRLKCLGCKAPINEGALCAYCVPK
EAEHYTKNLNTMVKLEKAYSSLWTECQRCMGDICHDVLCSNGDCPIFYRRRKAQIDLNAA
SEKVSRFGLDW
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgtttggtttgaccgagggcgggagctccgtgcttgtcagggtgcaccatttctatcac
tacttctacttgcccgtgaccgatgggattcagcctgaggccctggctgaagccatcaat
cgccgattgtggaatgacaagacagttccgagggacaggactgttgtgacgaatgttgag
attactacaaagcgcagtatcatgtattttattcctggcgacccggaggtcaagttttat
aagatcacacttctcaacccaaggcacacgaaggatgtcgctagaattctgcagcgagga
ggtttatcggtaaagaaacctaatgatgtaactgctaagttgcctgagctgcctactttt
gagagcacattggattacttgttgcgctttatgattgaggttggtctcgtgggatgttcg
tggctcaccttgccggctggaaagtatactattacggagcataagaagtctctgttgcaa
gtggaaatagatgtccatgcgaacgacatcatcgcacacaaccccgaaggaaaatggctg
agaacagcccccttacgtcgcttgtcctttgacattgaatgcgccgggcgaaaagggatc
ttccctgaaccggaacatgacaaagtcattcaaatcgcgaattacgtctgggatcacggc
cacaagaaaccaattgcacaggttgtgttcactcttaagagctgtgcggcaattgttggg
gcggatgttgtttcctatgaaaacgaggaagagcttttgtctgcatgggcacgattcgtc
cggcttacggacccagatatcctcacaggatacaatatagtcaactttgatcttccgtac
ctcctcgatcgcgcagcgcaactcaaagtggctgattttcccctccttggtcgaatgatc
ggccagccaacgaccatgagaaaaacgaggatgagctcctctgctttcgggacacatgaa
tctcatgccttttcaatgcatggccgcgttatttttgacatgcttcaactgatcacaaga
gaatacaaactgagatcctattctttgaattctgtatctgccgagtttctaggccagcaa
aaagaagatgttcactacagtatcattggagacctccaaagaggtgatgaacaaactcga
cggaggcttgccgtttactgtctaaaggatgcgctgttacctgtgagactcatggacaaa
ttgatgtcactgactaactacatggaaatggctcgtgtcactggcattccgttgggctgg
cttgtctcgagaggccacatgatcaaagttgtaagtttgttgcatcgtaagagtcacctt
gtagaccttctcattcctgatattaagcgttcgggccctgaagggggaggtggcgatgga
ccgcagtttgaaggagctaccgtcattaagccagagaagggatactacaaggacccgatc
gccactcttgattttgcgtccctgtatccttcaatcattatggctcacaacctgtgctac
agcacgcttgttcgaccagtccacctagctcatatgaagccagaggacttatcgaagagc
ccatctggggcatcatttgtgaagaggtcagtgaagaaaggcattctgacgaaaatatta
gaagaattattggctgcacggaagcaagctaaaaaagacctcaaagctgcgaaggaccct
ttcctacagtcagttttgaatgggagacagctcgctttgaagatttccgcgaacgctgtc
tacggtttcacaggtgcatctgtcggaaagctgccatgtatggacatttcagcttcaacc
acagcttacggtcgccaaatgattgacaacaccaggttggaagttgaaaaacgttacaag
ggagcgactgtcatttatggtgatacggattctgtaatgattaaatttggtaatggcaag
tctttggaagaatgtatgcgacttggtgaagaagcagcggaagcaatatcgtctatcttt
ccaaaacccgtcaaacttgagtttgaaaaatgttactatccgtacctactgataagtaag
aaacgatatgctggactgctgtggacaaataccgaaaagtacgacaagatggactgcaaa
ggaattgaagctgtaagacgtgataattgcaggcttgtcgcaaatgtcatttcttcagtt
cttgagtttcttctcaagaagagggatcttcaacaagcaatttctatggtgaagaaggtg
atatctgacttgctgcaaaataagattgatgtatctcttcttgtcgtatcgaagtcgttg
acaaagacagactacgagaacaaacaagctcacgttgttctagccgagaaactgcgcaag
agggatcctggaactgctccagctatcggtgatcgtgtcccttacgttattacgaaggga
aggaaaaacgaacctgcatactcacgagctgaggatccgttgtacgttttagagaggaat
atccccattgacaataattactacctcgagaatatgcttcgcaagcccctggaaagaatc
tttgagcctgtaatgaaaagttccgtgaactctttgtttgttggtgagcatacccgcacg
atatccgtggtaacaccgaagaaaggcggaatggcgaagtatacaaaggtgcgccttaaa
tgtttggggtgcaaagcacccatcaacgaaggcgcgctgtgtgcttactgtgtacctaaa
gaagcagagcactacacaaagaacttgaacaccatggtcaaactcgaaaaggcttattcc
tctttgtggactgaatgccagcgatgtatgggcgacatttgtcatgatgttctgtgtagc
aacggagactgcccaatattttatcggcggcgaaaagcacaaattgatctcaatgctgca
agcgaaaaggtctcgcgctttgggcttgactggtga
DBGET
integrated database retrieval system