Chondrus crispus (carragheen): CHC_T00007247001 Help Entry CHC_T00007247001  CDS       T02916                                  Name (RefSeq) hypothetical protein   KO K19525   vacuolar protein sorting-associated protein 13A/C Organism ccp  Chondrus crispus (carragheen) Brite KEGG Orthology (KO) [BR:ccp00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:ccp04131]     CHC_T00007247001 Membrane trafficking [BR:ccp04131]  Endosome - Golgi transport   Rab GTPases and associated proteins    Rab associated proteins     CHC_T00007247001 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  VPS13_VAB VPS13_M UBA_7 Motif Other DBs NCBI-GeneID:  17318536 NCBI-ProteinID:  XP_005710828 UniProt:  R7QQZ7 LinkDB All DBs AA seq 2969 aa AA seqDB search MSAELEEVRFAHGGGETVVSNGIVERSESALISFEMSLDFEDLQLELRDSGSKRVVTLSS TGTMIKLMKRPELVDFDFRVRTFAIIDGSRGATAPFRRLAYAGMNHYGSGLQASDSAPED SFAHGDQTTFIVLSYRGDLVNHEQSLAVKILSLHMVCVRETYFALADFFYLNKNKIQTPE SSYRASHVSHAGDAQQFAGTDRAVRGGGEANSDDVVYSDPFNALGMTTSSAAKALREQAE RRMEQTKQAIANRGRLHVTADLDGLNLTLVSADGAIGSFDVTNCRVGLTQFSNGAIEASG NLGGFGVQDLTSAHEVYSETIRYTRRGINPNYGSEEGDGWSLSVPESETEDVWLEARLTN LRIVYLQRFIIILKKYFDALRDSLKPVLEMKGGIGEVFQGEEHEEFPAIPRLTGRMRLKL VTENVDIVMPRHSQSPYEALRFFVPHSSISNEDRPSPGYRIGFQVNARDVNAHVLYRPPA EGEGRALTLGGKEPVLQQISPTCPISDLTPFAEGICIVAKLDAWRSRRVPQVILNTDGIP VLKDGEEEREYDPAKWLPTIRVRVCAPNGIYARLCEAEYSILYFTFTENVIERPDIEFTD IVRGLKTPVLPRRKPVQPIMFSSNRMPANYQILFEVPVIESTIMYGADPRAEEAKLIKSE LRDLLGCFEYGVDYRMSVEVSANMNSLVDIRPSAPTYGETLVMPTTRKFEQFSNSYDGDI KPQEDSSGNISEDNRSIALTWDRPFGFRANVMVVASDLRIIVEPELFRDLGNLTAPGFPF LKSSAPAPLLRFNGRLLILTISRPEVWLMANQYPGDARSLVIRGDVIAKVQWAAVTGRNR VEVAANGIHVNLSILGPHRSAFPVAPSSPLFKRSSSSWNTDVETPMLYPCDVSMKFDGSG YDPPKTPGEEPIKAPGSTLSVNAESILVRIDVNDAPLILAVGSRLVRLQSSVLSVRPPQP GRFDEWIDKGEEGDARLAIHFALPHSRLMFTDETAGRYVPIMEARLRNAVLRSNFPWLLN AAFEFALDLFNEEKGWWEPGIETFPIEFAASQGRSGSRAVNVRAERVIDINVTPITVSGA ARVSNALKSAIEDLASRMRAEVDDRGSGSGTVLSRNLSSSFRAPEAGARRPSVAAFSVRN ETGRSLVMWLLHDSTRWTLRGNGDEREVDTPTDEMLWTAIGASGGLSSDPNKNRQLAMRC VLLFSGYEAVTLSTAETGARLVTLVPDTRELGTLPSGNRGELTSQTFVWAVSMKHGVPCG CIRSLLRLVNKTSTVLEVNAGDLSKSASAGEQMKSLCARGSEGVDRKATVLLKAGASWSV PVHSVNRSIRIRPAIFHAPDNDMGLYEDNDRRPKARGRVRYSYTWSDPLSKMSALHTIAQ SLRAKARTGSDGELKTHGPIAPILTCRKAEARGFFCMSIFPLVDTKAESPIDGGSGVGSW VDVHICPPLVIENIMPRRLSFKLATSGAISASGKEQVVGYGTIEPSREAHIHTAGSDLNA LSISMGFDNSPQASETNIFSHSPPHRSFGTYHPNLASLRSISMGAGKYTPLKLSLIQEQR VNTRYVRAYCEFWIRNRSDTDLFFRNHGPGRDGYESGSPKAFLRGCPPGTVAEKFICFSG SWMSFQRVDVTEDIWVNIGTEVSEIDKPVPIKFDGLSLFLEVRPAKGRFQRALVVTIRNA AWLENRTGALLQWCQPEALNPHGIALAAKVHSIEPDKHCALHCDFRSHKTALCFRRATAD GLSDWIWSRPVFVTGVEGEFAAKMYRPKRHEQYIARVVVSKIGNGVSSIIVHKEDRSTPP YRIVNLCNARSIAFRQSGVNETHPWLVRPGKSTRYSWDDPQAPVKRRSLVIEVLEGTSGR DGAGNVTLLATSEADSAHADESDVTRLQGGLVRKPKGAKASKFDLNIDIIRKDIPFSNSK RFDPPLCISVHVDGPTKVVTFRDGEGKASKSTKQIERGEVEDSIEVAANSKSYGPSDTAD ASGNVDVELFVKGLGISFVESTPAELAYLSVSGIHFRLDRFDGQQLVICEVMDLQLDNQL SHCTWPVVLWSPPPPSTGVIGRMTERAKDGMSSSQTTRREPPRKPFFQFTLHGQYPAIEQ RIGSFRGIFVALQELQLAADEDFVLRVWLFVVSLLEAAGGSNREREEALDGKDGAETGLA LLANDNATTGTKQRAVATKGRASGALNRIYVEHLELCPLKLSVSFTSSRTSSAAEHIGGF RSLIRTLVAVLGNVENAEFRFNALELQHVFDTASHFRSLITEYYVSQGSNQKMVLLASNS LIGNPSALFDSIAIGTRDFFVEPANAKGSADFIASIGRGSSSLLTNTVGGIVGSLGGIPR AVAQGLETAVGDREYLAERDSIRGGRARIASSPAQGLYTGALSFGHGIASGAAGLIRDPI QGAAEEGPSGFIKGLGKGFIGGMLKPITGALDLIAEPAAGFRSMMVSDRSHGLAEPARPP RAFWGANADQMISYDLRAALGHAILRVVNSGENQSNEERLLSWTHLVAVHSGATEDDVIA FLWALMRRSTRSSHFHTKYLLDAQGNPQRAEKMRAGLVTNKRLIVASLDGHVIWEYPLLH IADTQVSVAAKDYLMVGIRPLGQKSRTTAPTGWQKIHCGSISSRNDFNTALRKALDDLRI TTKAVLPIPQNILLAKKSAAGQGVREHYRDGSLELADLSNSMQQGTESGNMYELKSLHQD ASVDGRRGVFTDMKLPGRSSNTVRSQNMSLTDQDISLQLQKIANSASAISIDAARSVRLI VVNLTEHALRLVCSSLDSGAWVQEPTSTIEKRSVSLFEADGTADRAKDISGRIVMQVGTD GGKSGKMFIIRFLNPLLASNAYAVEAPAGFVARFQGGEKGNHVETVITLASESNLQGIAV SKKQESISRKAPAEPLLFGRSQVSPFLLPLNSKPPHAPQNPSADPRDPELIAKLSSLGFS SEESMSALEECDADLAAAYALLLDRKPKE NT seq 8910 nt NT seq  +upstreamnt  +downstreamnt atgtctgcagagcttgaagaagtgcggttcgctcatggcggtggtgaaacggtggtatcg aatggcatcgtggaacgctcagaatctgcgctcatatcatttgaaatgagtttagatttt gaagaccttcaacttgaactacgcgattcaggctcgaagcgtgttgtcacattatcctca accgggaccatgatcaaattgatgaagaggccagagctcgtagacttcgattttcgggta aggacgtttgcaatcattgacgggagtcgaggcgcaacagctccgttccgtcgcttggcg tatgcggggatgaaccactatgggtctgggcttcaagcatctgactccgcccctgaagac agtttcgcccacggagaccaaaccacgttcatagtgctgtcgtaccgtggtgacttagta aatcacgagcagtctttggccgtgaagatactgtcactgcatatggtgtgcgttcgagag acctatttcgccctagcagatttcttctacttgaacaagaacaaaattcaaacaccggaa agttcttaccgagcgtcccatgtcagtcacgctggtgatgcacagcagtttgcgggtact gatagagcggttcgcggtggaggagaggcgaacagtgacgacgtggtatattcggatcct tttaacgcacttggtatgacgacgtccagcgccgctaaggctctacgggaacaggctgag cgcagaatggaacagacaaaacaggctattgccaatagaggtcgtctgcacgtcactgca gatttagacggtctaaaccttaccctcgtctccgctgatggtgcgattggaagctttgac gtcacaaattgtcgcgtaggtcttacgcaattctccaacggggcgattgaagcatcgggg aaccttggtggtttcggtgttcaagacctcacatctgcgcatgaggtttactctgagact atcaggtatacgcgcagggggattaacccaaattatgggtctgaggaaggcgatggatgg tctctaagcgttccagaatcagaaaccgaagacgtatggttagaggcccgtttgacgaat ttgcgcattgtgtacttacagcgcttcatcatcattctgaagaagtactttgatgcactg cgagatagcttgaaaccagttctggaaatgaagggaggcataggcgaagtatttcaaggt gaagaacatgaagagtttcccgcaattccaaggcttactggtcgaatgcgtttgaaacta gtgacggagaatgtggatattgtgatgccccgtcattcacagagcccctatgaggcattg cggttctttgtaccgcactcatcaatttcaaatgaagatcgtccgtccccaggatatcgc atcggatttcaagtgaatgctcgagacgtaaacgctcatgtcctgtatcggccaccagct gagggggaagggagagctttaactctcggtggaaaagagccggtcttgcaacagatatca ccgacatgcccaatatcggatctgaccccatttgcagagggtatatgtattgtcgcgaaa cttgatgcatggcggagtcgccgagttccgcaggttattctaaatacagatggtatccca gtgttgaaagatggggaagaagaaagagagtacgacccggcgaagtggctaccaacaata agggtacgggtatgtgcacccaatggcatttatgctaggctatgtgaagcagagtatagc attctttatttcacttttacggaaaacgtgatcgagagaccagatattgaattcacggac attgtgcgtggtttgaagacgccagttcttccaagaagaaaaccagtacaaccaataatg ttttcgtcaaaccggatgccggcaaactatcaaattctatttgaagtgccagtaattgag agcactataatgtatggagcggatccccgagccgaagaggccaagcttatcaagtccgaa ctccgagacctccttgggtgctttgaatatggggttgactaccgcatgtctgtcgaggtg agcgccaacatgaattcccttgtggatattcgcccgtcagctccaacttacggggaaaca cttgtgatgccgacaactcggaagttcgagcaattcagcaattcatatgacggtgatatt aagcctcaagaggacagctcaggtaatatatctgaggacaatagatccatcgctttgacc tgggaccggccattcggtttccgtgcgaatgtgatggtggttgcatcggacctgcgtatt attgttgaaccagagctcttcagggatcttgggaatttgacggcgcctgggttccctttt ctgaagtcatctgcccctgctccgctcctgcgatttaatggacgacttttaatactgacg atttctagaccagaagtctggttaatggcgaatcaatatccaggtgatgctcgttctctg gttattcgcggtgacgtcattgctaaggtacaatgggcggctgtcacgggacgcaatcgt gtcgaagtagcggcaaacggtattcatgtgaacctgtcgatcttgggaccccaccgtagt gcatttccggttgcaccgagcagcccgttgtttaagcgatcatcttcgtcatggaacacc gatgtagaaacgccgatgttatatccatgtgacgtctctatgaagtttgacggtagtgga tatgatcccccgaaaaccccaggagaggagcccatcaaggctcctggctcgactttgtct gttaatgctgaatcgattttggtgcgaattgacgtgaacgatgcaccactgatacttgct gtgggttctcggttagtgaggttacagtcgagcgtgctttcagtgcggccgccgcagcct ggtcggtttgacgaatggattgacaaaggggaggaaggcgatgcccggcttgccatccac ttcgctcttcctcacagtagacttatgtttacagatgagactgcgggaaggtatgtgccc attatggaagcacgtctcagaaatgctgttctccgatcaaatttcccgtggcttcttaat gctgcattcgaatttgctctggacctcttcaacgaggagaaaggatggtgggaaccaggc attgagacctttccaatcgaatttgctgcatcgcaaggtcggtctggatcgcgagcggtc aatgtgcgagctgaacgagtcattgacatcaacgtgaccccgattacagtctccggagcc gctcgagtttcgaacgcgttgaagtcggcgattgaagatttagcttcaagaatgagggca gaagtagatgacagagggtctggttcggggacagtgctttcgagaaatctgagttccagc ttccgtgcacccgaagcgggtgcccgtcgaccaagtgttgctgctttcagtgtgagaaac gaaactggtcgtagtcttgtgatgtggcttcttcatgattccacaaggtggaccctgcga ggaaatggagatgagagagaagttgatacgcccactgatgagatgctgtggaccgccatt ggtgccagcggagggttgtcttccgatccaaacaaaaatcgtcagcttgccatgcggtgc gtgttacttttcagcggatatgaagctgttactttatcgactgctgaaactggtgcgcga cttgtaacgctagtgcccgatacacgtgaactaggaacattaccgtctgggaatcggggc gaactcacctcgcaaacatttgtatgggccgtatcaatgaaacacggggttccgtgtgga tgtattcgatctttattgcgtcttgtgaacaaaacgagtactgtgttggaagtcaatgcc ggtgatctctcgaaatctgcaagcgctggtgagcagatgaaatcgttgtgcgcaagaggt tcggaaggagtcgatagaaaggcaacagtattgctgaaggcaggagcttcttggtcagtt ccggttcactcagtcaaccgatctattcgtatcagacctgctattttccatgcccctgac aatgatatgggtttgtatgaagataacgaccgacgccccaaggcgaggggaagagtgcgc tatagctacacctggagtgatccgttaagcaagatgtcggctctgcatacaatagctcaa agcttgagagcaaaagctcgaacaggaagtgatggcgaactgaaaacacacgggccgata gctcccattctgacatgcaggaaagcagaagctcgaggcttcttttgcatgtctatcttc ccactagtagatacaaaggctgaaagtcccatcgatgggggtagtggtgtcggctcatgg gtcgatgttcacatttgtccgccacttgttattgagaatatcatgccccggaggctgagt tttaagcttgccacctctggtgccatcagtgcttctgggaaggaacaggtggttgggtat gggacgatcgagccctcgcgtgaagctcatattcataccgcaggatcagatttgaatgct ctttcgatttccatgggctttgacaacagtccccaagcatcagagacaaacatattttcc cattcgccaccacaccgtagctttggtacttatcatccgaatttggcaagtttgaggtcc atatcgatgggtgcaggcaaatatactccgttgaagctcagtctcattcaagagcaacgg gtgaatacaaggtatgtacgggcatattgcgaattctggattaggaaccgttcggatacg gacttattcttccgaaatcacggaccagggcgtgatggatatgaatcgggaagtccaaag gcattcttgcgtggttgccctcctggaaccgtggcagaaaagtttatttgtttttcaggc tcgtggatgtcctttcaaagagttgatgttacagaagacatttgggttaacattggaacg gaggtttccgaaattgacaagcctgtacccataaaatttgatggcttatccctcttcctt gaagtgcggccggcgaaaggtcgatttcaacgggctcttgtagttacaataaggaacgct gcctggctcgagaaccgcacaggtgctcttctccaatggtgtcaaccagaggcccttaac cctcatgggatagctcttgcagcaaaagtacattcaattgaaccagacaagcattgtgct cttcattgtgactttcgatcccataagactgcgctatgttttcgacgagcaactgcggat ggcttgagcgattggatatggtcgcgtcccgttttcgttacgggagtggaaggagaattt gcagcaaaaatgtatcgtccaaagcggcatgagcaatacatcgcccgtgtagtcgtttcc aagataggaaatggagtttcgtctattatcgttcacaaagaggatagaagcaccccacct tacaggattgtcaacctatgcaacgcaagatccatagcattccgacagtcgggagttaac gaaacccacccatggttggtcaggcccggcaagtctactcgttactcgtgggatgaccct caagctccagtcaagcgccgctctctagtgattgaagtgctggaagggacaagcgggaga gatggggcgggtaatgttaccttacttgcgacgagtgaagctgattctgcgcacgcagat gagtcagacgttactcggctgcaaggagggcttgtcagaaaaccgaagggagcgaaggcc tcgaagtttgacctcaatattgacataatcagaaaagacatcccgttttcgaattcgaaa cgatttgatccacctctctgcatatccgttcatgttgacggccccacgaaagtagtaacc tttcgagatggtgagggcaaagccagtaagagtacgaaacaaattgaaagaggagaagtc gaggattctattgaagttgcagccaacagcaaaagctatggaccatcagataccgcggat gctagtggaaacgtcgatgtcgagctttttgtgaaaggccttggaatatcgtttgtggaa tcaacaccagctgaacttgcttatctttctgtttctggcattcatttccggttagataga ttcgatggtcaacagctagtgatttgcgaagtcatggatctacagttggacaaccagctt tcacattgcacatggcctgtagttttgtggtctcccccgccaccatccacaggtgtgatc ggacgaatgacagagagagcaaaggatggaatgtcttccagtcagactacacgccgggag ccaccccgtaagccattttttcaattcacacttcatggacagtaccctgcaattgagcaa cgcattggaagttttcgtgggattttcgtcgcactccaagagctgcaactcgcagccgac gaggattttgttcttcgggtttggctctttgtggtttcgctgcttgaagcagctggtggc tcgaatcgagagagggaagaagcacttgatgggaaggatggtgcggaaactggccttgct cttcttgcgaatgataacgcaactacggggacaaaacaacgggctgtagctacgaaaggt agagcaagtggtgctcttaaccgtatctacgttgaacacctggagttgtgcccactgaag ttatctgtttcattcacatcgtcccgaacatcaagtgctgcagaacatattggcgggttc aggtctcttattcgaacactggtggctgttcttgggaatgttgagaacgcagaatttcgc ttcaatgctcttgaattgcagcatgttttcgatactgcatctcatttccgctcgttaatc acagagtactacgtctcacaaggttcaaaccaaaaaatggtgctactggcatcaaactca ttgatcgggaatccatcagcgctctttgactccattgcaatagggacgcgagattttttc gtcgaaccagcaaatgcgaaaggatctgctgattttatcgcaagcattggccgtggatct tcgtcattactgacgaataccgtaggagggatcgttggatctttgggtggcatcccccga gctgttgcgcagggactagagacggcagttggcgaccgtgagtacctcgcagaacgtgac tctattcgcggaggtcgtgctcgaattgcatcctctccggcgcagggtctttacaccggc gcgctcagctttggtcatggaattgcttcgggagcagctggtttaattcgagacccgatt caaggagccgctgaagagggaccttcgggatttatcaaggggctaggaaaaggtttcatc ggtggaatgctaaaaccaatcactggagctctcgacctaattgctgaaccagcagcaggg tttcgcagcatgatggtatccgatcggtctcatggtcttgctgaaccagctcgtcctccg cgcgcattctggggtgcaaatgctgaccaaatgatatcctacgacctgcgcgcggctctc ggacatgctattctcagagttgtcaacagtggagaaaatcagtcaaatgaggagagacta ctctcctggacacaccttgtagctgttcattccggcgcaacggaggacgatgtcattgcg tttctgtgggcgctgatgagacgaagcacgcgctcgtctcatttccatacaaaatatttg ctcgatgcccaaggcaacccacaaagagcagaaaaaatgagagccggtctggtgacgaac aaacgattgattgtagcatcgttagacggccatgtaatatgggagtatccgttattgcat atcgccgatacgcaagtttcggttgctgcaaaggactatttaatggttggaattcgtccg ttaggacaaaagtcaaggacgactgcgccgaccggatggcaaaagatccactgcggatcc atttcgtctagaaacgacttcaacacagctttgcggaaggctcttgacgacctgcggata acaaccaaagcggttcttcccatcccccaaaacattctactggccaagaaatcggcggct ggacaaggagtgcgggaacactatcgcgatggctccctcgaattggccgatttatccaat tctatgcagcaaggaacagaatccggaaatatgtatgaattgaagagcctccatcaagat gcctctgttgacggacgtcgcggtgtattcacggacatgaagcttcccgggcgttcttcg aatacagtgcgaagccaaaacatgtcattaacagaccaagacatatcactccaattacaa aagatagcaaacagcgcatctgcaatttcaattgacgctgctcgatcagttcgactgatt gttgtgaatctaacggagcatgcgttacgcctggtttgctcttcccttgactctggtgca tgggtgcaagagccaacatccacaattgagaagagatcagtatctctctttgaggcagat gggacagcggatcgtgcgaaggatatctctggaaggatagtgatgcaagttggtaccgat ggagggaaatcggggaagatgttcattattcgctttttgaatcctctgctggcctccaat gcatatgctgttgaagctccagcagggtttgtggctcgctttcagggtggtgagaaagga aatcatgtggaaactgtgataactctagccagtgagtctaacttacaaggtattgcagtg agtaagaagcaagaatcaatctcaagaaaggcgccggccgagcctttgcttttcggaagg agccaagtgagtccattcttgctaccattgaactcgaaaccgcctcacgccccacaaaat ccatctgcagatccgagagaccctgaactcatcgcgaagctttcttcactaggattttca tcggaagagtcaatgtcggctcttgaagaatgtgatgcagatcttgctgcagcctatgca ctacttctcgaccgaaaaccaaaagaatag

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