KEGG   Chondrus crispus (carragheen): CHC_T00008124001
Entry
CHC_T00008124001  CDS       T02916                                 
Name
(RefSeq) hypothetical protein
  KO
K02328  DNA polymerase delta subunit 2
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03030  DNA replication
ccp03410  Base excision repair
ccp03420  Nucleotide excision repair
ccp03430  Mismatch repair
ccp03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CHC_T00008124001
   03410 Base excision repair
    CHC_T00008124001
   03420 Nucleotide excision repair
    CHC_T00008124001
   03430 Mismatch repair
    CHC_T00008124001
   03440 Homologous recombination
    CHC_T00008124001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ccp03032]
    CHC_T00008124001
   03400 DNA repair and recombination proteins [BR:ccp03400]
    CHC_T00008124001
DNA replication proteins [BR:ccp03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase delta complex
    CHC_T00008124001
DNA repair and recombination proteins [BR:ccp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase delta complex
      CHC_T00008124001
   MMR (mismatch excision repair)
    DNA polymerase delta complex
     CHC_T00008124001
SSDB
Motif
Pfam: DNA_pol_E_B DNA_pol_D_N
Other DBs
NCBI-GeneID: 17319825
NCBI-ProteinID: XP_005712116
UniProt: R7Q512
LinkDB
AA seq 509 aa
MHSLEPTPPNGNGQESHPTVRVVSEIDLSPAKRFILPKKKKYEPQYAHVYFSRLKSLTAH
VLKSAKLTFGEGEEGKLQYSKRIADIASKDEMETVVVGVIFRHMKSKPSILAQYDVPSHE
LIPAPPDRATCTYPRDDDEVFIEDEYGRCALDLSQLDSAVATLSLVTGFVLALKGHEDRR
TGSFKVNAISYAGQAPQKSLPELPGDKFICITSALSFGKADGDVLAAELLMEFLRGSAGE
DPEGSTCANIVQLIVAGNSVPQLEDTESGPSAVLAAHRPLKSGEKERVAAPIVEVDRFLS
VIASSLPVAVMPGEADPVNYLLPQQPFHRCLLPSSSRNENLARVPNPFECSVDKRVILGT
SGQPVTDFALYEDQSSVMKDGKEAGKLRPSGEKVLDILTLMLQNRHLAPTCPDTLASFPF
SDGSDPFVLESTPHVFFAGNQREYASRLVRTPHVQTQASSGSSMDIDGVQGGEKTVRIVS
VPRFDETGQVVLVNLRTLDCIVREFALTM
NT seq 1530 nt   +upstreamnt  +downstreamnt
atgcattccctggagcccacaccgccgaacgggaacggccaggaatcgcatccaacggtc
cgcgtagtgtcggagatagatctttctcctgcgaaacgcttcattctcccgaagaagaag
aaatatgaacctcagtatgcgcatgtctatttcagccgtctgaagtcgctgacagcgcat
gtcctcaaatccgctaagctcactttcggagaaggggaagaaggaaagcttcagtattcg
aagagaattgcagatatcgcgtcgaaagacgagatggagactgtcgttgttggcgtcata
ttccgtcatatgaaatcgaaacccagtatactggcacaatacgacgtcccctctcatgag
cttatacccgcgcctcccgacagggcaacctgtacctacccacgcgatgacgacgaagtc
ttcattgaagacgagtacgggagatgtgctttggatttatcgcaacttgattccgccgtt
gcgaccctctctctagtgaccggatttgtcctcgctctgaaaggacatgaggacaggcgc
accgggtctttcaaagtgaacgccatctcgtacgcaggccaggcgcctcaaaagtccctg
cccgaattgcctggagataagttcatctgcatcacatccgcactgtctttcgggaaggct
gatggtgatgttcttgcagcagagctactaatggaatttttacggggcagcgcaggtgaa
gatcctgaagggtctacatgtgccaatatcgtgcaactgatcgtggcaggaaattcagtc
ccgcagctggaagatactgagagtggcccgtcggcagtccttgccgcccatcgaccgttg
aagagtggcgagaaggaacgcgtcgcagcacctattgttgaggttgaccgctttctttct
gtaattgcctcgtcgctacccgtcgctgtcatgcccggcgaggctgatcccgtcaattac
cttcttccacagcagccgtttcaccgatgtttgctgcccagctcatctcggaatgagaac
cttgctcgcgtgccgaacccgtttgaatgctcagtagacaaaagagttattcttgggaca
tcagggcaaccggtcactgactttgcgctgtacgaagatcaatcgagcgttatgaaggac
ggtaaagaagcgggaaagttgcggccatctggtgaaaaggtgttggacattctgacgctg
atgttgcagaatcgccatctggcaccaacatgtccggacacgcttgcttcttttccgttc
tctgatggctctgatccctttgtcctggagtcaaccccgcatgtgttcttcgcaggtaac
caacgggaatacgcgtctcgattggtaagaacaccacatgtgcaaacccaggcttcatca
ggtagttctatggacattgatggcgtgcaaggtggtgagaagactgtgcggatcgtttca
gtgccacggtttgacgagacaggtcaggttgttctagtgaatctgagaacattggattgt
atagttagggagttcgcattaacaatgtaa

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