KEGG   Chondrus crispus (carragheen): CHC_T00008183001
Entry
CHC_T00008183001  CDS       T02916                                 
Name
(RefSeq) hypothetical protein
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03020  RNA polymerase
ccp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CHC_T00008183001
  09124 Replication and repair
   03420 Nucleotide excision repair
    CHC_T00008183001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccp03021]
    CHC_T00008183001
   03400 DNA repair and recombination proteins [BR:ccp03400]
    CHC_T00008183001
Transcription machinery [BR:ccp03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     CHC_T00008183001
DNA repair and recombination proteins [BR:ccp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CHC_T00008183001
SSDB
Motif
Pfam: RNA_pol_Rpb4 WH_PARP12
Other DBs
NCBI-GeneID: 17319863
NCBI-ProteinID: XP_005712147
UniProt: R7Q1N9
LinkDB
AA seq 162 aa
MDHSNALDPKDEPLLPGEHEAPGVTPSRPTRPVRSGDEDAAKLEFGAEFDEQKGQPLFTA
EVLQLLKLHKEKNQHVQVNNRLLEPSLEHCERFGQIETTDAAIMVREQLQKVEPRLHPFE
VAQLASLMPKDAEEAKAIIPSLAANYDDDVLNEILKNMDAWL
NT seq 489 nt   +upstreamnt  +downstreamnt
atggaccactccaacgccctggacccaaaggacgagccattgctgccgggagagcatgaa
gcccccggtgtcaccccgtcgcgcccaacaaggcctgtccgatcaggcgatgaagatgcg
gccaagcttgagttcggcgctgaatttgacgagcagaaaggccagccgttgttcacggct
gaggtccttcaattgctcaagcttcacaaagaaaagaatcaacatgtccaagtcaacaac
aggcttcttgagccgtctctggaacactgcgaacgctttggccagatcgaaactacagac
gccgccatcatggtccgcgaacagctccaaaaggtcgagcctagactacacccatttgaa
gtcgcccagctcgccagtctaatgccgaaagatgcagaggaagcaaaggctatcattccg
agtctagccgcgaactatgatgatgacgtgctaaacgagattctcaagaacatggacgcc
tggttgtga

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