KEGG   Chondrus crispus (carragheen): CHC_T00008698001
Entry
CHC_T00008698001  CDS       T02916                                 
Name
(RefSeq) histone deacetylase
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03082  ATP-dependent chromatin remodeling
ccp03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    CHC_T00008698001
   03083 Polycomb repressive complex
    CHC_T00008698001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ccp03036]
    CHC_T00008698001
Enzymes [BR:ccp01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     CHC_T00008698001
Chromosome and associated proteins [BR:ccp03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     CHC_T00008698001
   HDAC complexes
    Sin3A-HDAC complex
     CHC_T00008698001
    BRAF-HDAC complex
     CHC_T00008698001
    REST complex
     CHC_T00008698001
    SHIP complex
     CHC_T00008698001
    MiDAC complex
     CHC_T00008698001
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     CHC_T00008698001
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    CHC_T00008698001
  Chromatin remodeling factors
   NuRD complex
    CHC_T00008698001
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 17323499
NCBI-ProteinID: XP_005715783
UniProt: R7QD25
LinkDB
AA seq 390 aa
MSKKRVSYFMDHDVGGYYYGKDHPMKPHRIAMTHNLVLAYGLYRKMEIYRPRQASPEELK
EFHAADYVSFLQRINPDTAPQHLAQLTKFNLNLRPDLDCPVFDGLFEYCQTSVGGSIDGA
RKLMAGTSDIAINWAGGMHHAKKGQASGFCYTNDIVLGIIEMLRFYPRVLYVDIDVHHGD
GVEEAFYVTDRVMTVSFHKYGNDFFPMTGDIWDIGAGRGRYYAVNCPLMDGITDARYEQL
FKTVITKVMEMFRPSVVVLQCGADSLCNDRIGTLNLTLEGHAACVQITGILLDRKLDDTI
PYNDYWEYFAPEHKLHFPPKKMVDMNSKDYLEKMVEKIMENLRCLDAAPSVQMHTVPSGI
SYFSDDNNDNLDPDMREENGRRKADNEFYD
NT seq 1173 nt   +upstreamnt  +downstreamnt
atgtccaagaagagagtttcctactttatggatcatgacgtcggtggatactattatgga
aaggaccatcccatgaagcctcatcgaatcgctatgacccataatcttgtgctggcatat
ggtctttatcgcaaaatggaaatctaccgcccacgtcaagcctcgcccgaagagctcaaa
gagttccacgcggcggactacgtgtcttttctgcaacgcataaaccccgataccgcaccg
caacatctagcccagctcaccaaattcaacctcaacctccggccggacctcgactgcccg
gtctttgacggcctcttcgaatattgccaaacctctgtcggggggagcatcgacggggcc
cggaaactcatggcgggcacgtccgacatagccattaactgggccggcggtatgcaccac
gcaaagaaggggcaagcctcggggttttgttacacaaatgatatcgtccttggcatcatt
gagatgctccgcttttaccctagagtgctgtatgttgacattgacgtgcatcacggcgac
ggcgttgaggaagcgttctacgtcaccgacagagtcatgacggtctcgtttcacaagtac
ggcaacgacttttttccgatgacgggcgatatttgggatatcggtgccggtcgcggaagg
tactacgccgtcaactgcccgctcatggatggcatcacagatgcccgctacgagcaactc
ttcaagactgtcatcacaaaagtaatggagatgtttcgtccctcagtcgtcgttctgcag
tgcggcgcagattcgttgtgcaacgaccgcatcgggacgttgaatctcacgcttgagggg
catgccgcctgcgtccagatcacggggattcttctcgacagaaaacttgatgacaccatt
ccctacaacgactactgggaatatttcgctccggagcacaagctgcatttcccgccgaag
aagatggtggacatgaactccaaagactacctggagaagatggtggaaaagatcatggaa
aacctgcgctgtttggatgcagccccgtctgtgcagatgcacactgttccatcagggata
agttacttttcagacgacaacaatgataatctagaccccgacatgcgtgaagaaaacgga
aggcggaaagcagacaatgagttctatgactga

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