KEGG   Chondrus crispus (carragheen): CHC_T00008876001
Entry
CHC_T00008876001  CDS       T02916                                 
Name
(RefSeq) WD40-repeat containing protein
  KO
K14855  ribosome assembly protein 4
Organism
ccp  Chondrus crispus (carragheen)
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ccp03009]
    CHC_T00008876001
Ribosome biogenesis [BR:ccp03009]
 Eukaryotic type
  Pre-60S particles
   Other pre-60S particles
    CHC_T00008876001
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40 Beta-prop_IFT122_1st WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 EIF3I WDR55 WD40_Gbeta WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_TEP1_C Beta-prop_Aladin DSE1_N Beta-prop_WDR41 ANAPC4_WD40 Beta-prop_EML Beta-prop_WDR90_POC16_2nd CFAP251_N Beta-prop_WDR36-Utp21_1st Beta-prop_EIPR1 Beta-prop_RIG_2nd NBCH_WD40 ASA1 WD40_MABP1-WDR62_1st NLE PAC11 Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_Nup120_160 Beta-prop_DCAF12 Ge1_WD40 Beta-prop_ACSF4 Beta-prop_SPT8 Beta-prop_WDR35_TULP_N Beta-prop_WDR75_2nd Beta-prop_DCAF4 Beta-prop_Vps41 TRM82_WD Beta-prop_HPS5 Beta-prop_VPS8 Beta-prop_NUP159_NUP214 WD40_RFWD3
Other DBs
NCBI-GeneID: 17325078
NCBI-ProteinID: XP_005717362
UniProt: R7QJ72
LinkDB
AA seq 488 aa
MASTDVAMDKGETTIIQFQSAEGEKAGPSLDIPLSSTPEQLTSLLNELLENDEPLPYAFF
LSDSREEVTKSLKLAMKSVSVGKEKILSITFQPQSLFRVRSVTRCTSSLPGHEEAILTSA
FSPDSKSLATGSGDTTVRCWNPESQLPDKTLRGHKQWVLAICFSPDALRLATASMDGSVR
VWDPTLGEIIGKPLLGHKKWVTSLFWQPYHLSTKCTHLVSASKDNTLRIWNTAASTCYKV
LAGHSAAVTCVRWSGENVIYSASQDRTIKVWDPQTGLVVRNISAHGHWINTMTLNTDYVL
GCGAFPMLDEATGYIAKKLDAVVASRRYEDVKRKMVGGKERLITGSDDFTLIMWEDLANN
LSKHAKPVTRMTGHQQLVNDVRYSPDGVYIASASFDKSVRLWDGASGKFLFTFRGHVGAV
YRIVWSADARLLLSASKDSTCKVWEMRTRKLKSDLPGHSDEVYTVDWSIDGKRAVSAGKD
KVVKIWHH
NT seq 1467 nt   +upstreamnt  +downstreamnt
atggcaagcacggatgtcgccatggataagggcgagacaacaataattcaatttcagtct
gctgagggtgagaaagccggtccctctcttgatataccactctcctcaactcctgaacaa
ctcacaagtctcctaaacgaattactcgaaaatgacgagccactgccgtatgcatttttt
cttagcgactcccgggaagaggttacaaagtcgctcaaattggcaatgaagagtgtgtct
gtgggaaaagagaagatattgtccattacgtttcagccacagtcactgttccgcgttcgc
tccgttactagatgtacatcctctttacctggacacgaggaagctattctcacctctgct
ttctctccagattccaagtcactggcaacagggtctggagatactaccgtacgatgctgg
aatccggaatcgcagcttcccgacaagacgctgaggggacacaagcagtgggtgttagcc
atttgcttttctcccgacgctttgcggctcgctactgcttcgatggatggttcggttaga
gtatgggatccgacgctaggcgaaatcatagggaagcctttgctagggcataagaagtgg
gttacctcactcttttggcaaccataccatctatccaccaaatgcactcaccttgtttct
gcatcaaaggacaatacgttgagaatatggaacactgcggcttcgacgtgctacaaggtg
ttagcaggccatagcgcagccgtcacgtgcgtcaggtggtctggtgaaaatgtcatctac
tctgcttctcaagatagaacgataaaggtttgggacccgcagacggggctagttgttcgt
aacattagtgctcacggtcattggataaataccatgactctgaacacagactatgtttta
ggatgcggggcgttcccgatgttggacgaagcaactggttacatcgcgaagaaactcgac
gcggtagttgcgagcagaaggtatgaggatgtcaagcggaagatggtgggtgggaaggaa
cgactaatcactggctctgatgactttactctcatcatgtgggaggacctcgcaaataac
ctgtcgaaacatgcgaagcccgtgactcgcatgaccggacaccaacaactcgtcaacgat
gtgcgctacagtccggacggagtatatatcgcatcagcgagttttgacaagagcgtgcgg
ttgtgggatggagcttcaggtaaattcctcttcacattccgaggacatgttggtgctgta
tatcgaattgtttggtctgctgacgcgcgcctgttgctcagcgcgtctaaagacagcacc
tgtaaagtctgggaaatgagaacgagaaaactgaaatcagatctgcctggtcattcggat
gaagtttacaccgtggactggagcatcgacggaaagagagcagtttctgcggggaaggat
aaagtagttaagatttggcatcattaa

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