Chondrus crispus (carragheen): CHC_T00008945001
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Entry
CHC_T00008945001 CDS
T02916
Name
(RefSeq) exosome component 4-like Rrp41-like
KO
K11600
exosome complex component RRP41
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHC_T00008945001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccp03019
]
CHC_T00008945001
Messenger RNA biogenesis [BR:
ccp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CHC_T00008945001
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
CHC_T00008945001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
M64_N
Motif
Other DBs
NCBI-GeneID:
17321798
NCBI-ProteinID:
XP_005714081
UniProt:
R7Q6U6
LinkDB
All DBs
AA seq
202 aa
AA seq
DB search
MFASPVYRSTWKGDGKSTAAALVMQKAFEGVILTAPYPKSQIDIYLQVLQNDGGALVATV
NAASLALVNVGVAMSDFVVACGVGFVDDTFVVDPSSLESASDRPELTLAVLSHSAKIASC
QLDSKLPDGESFERALEFATSGANQIFKVLEYEVRKYSLNGPGGPRRGVARANRPRGGEA
GGERQVGETRELGRARPEATCS
NT seq
606 nt
NT seq
+upstream
nt +downstream
nt
atgttcgcctcccccgtctaccgcagtacctggaagggcgacggcaagagcaccgccgcc
gccctcgtcatgcagaaggccttcgagggcgtcatcctgaccgccccgtaccccaagagc
cagatcgacatctatttacaggtcctccagaacgacggcggcgcgctcgtcgccactgtc
aatgccgccagtttggcactggttaatgtcggcgtcgccatgtcggatttcgtcgtcgct
tgtggtgtgggctttgtggacgacacctttgtcgttgatcctagctcgttggagagcgcc
tcggatcgcccggagctcacgctcgccgtcttgagtcactctgctaagattgcttcgtgt
cagttggatagcaagctcccggatggcgagtcgtttgaacgcgctttggagtttgcgacg
tcgggtgccaaccaaattttcaaggtcctcgagtacgaagtgcgcaagtatagcttgaac
gggcccggcgggccgcggcgcggcgtggcgcgcgcgaaccggccgcgagggggagaggcc
ggtggcgagcgccaggtgggcgagacaagggagctcgggcgcgcgcgacctgaagcaact
tgctca
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integrated database retrieval system
