Chondrus crispus (carragheen): CHC_T00009099001
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Entry
CHC_T00009099001 CDS
T02916
Name
(RefSeq) exosome component 10 Rrp6
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHC_T00009099001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccp03019
]
CHC_T00009099001
Messenger RNA biogenesis [BR:
ccp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
CHC_T00009099001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
17319895
NCBI-ProteinID:
XP_005712179
UniProt:
R7Q3D8
LinkDB
All DBs
AA seq
954 aa
AA seq
DB search
MAPKPDADKKSSHATVPASKAHCVRVLKSLRRTAVESDPLPQGDDLELLHAVCPETSASL
RRATRRVRAAVSAAAACYVPAATDPESESSDSAPSVAAEALFDRVHEATDEALEQFNAAL
DRARGIQDAEPLETGAVGPETRLGSGRHRECAWVEMEKPQMAFPDWPVDNSDTAFVPPGV
AGAKGADVDVYLQELYQANSKASGGEMEGKHPYEEEIRAAEEEMAARVFKKEDTVVYRSM
KSTPCTFIKTEEKLFEVANRLKRVGEVAIDIENHSVRSFQGFTCLIQMSTRREDVVVDAL
ALRGSVHRALAPIFADESIVKVLHGADKDVQWLERDFGVFVVNMFDTGQAARLLKFPSAA
LSYLQARFCDVTGTSKKKFQLSDWRQRPLPDDMFQYARSDTHYLLYIYDRLKTELADKEL
TAKAWKRSAVVARKRYKKTRYDGGIPRHLCAKYGLGFDAHQIRLLEELYGWRDRKGREED
ESLNYVAPLGSLFGIVRARDRVRTVEGLMKYGFPSKSVPPMIKANADEIVRLIVDSLDAK
LGDLEKKCAARPAPIQSSGAGDGAKEVPKGVAMHRKEAKEGLPSGGSLPLRSKTTASTEQ
PQVTLKASALRKSRLYDSDSSDSDIDEGSVSKVEVGVLNPAPGGEGSAGGLSVLSLTKPD
ALASSPRELPGPPESDPNPRTLAENAKPICTVTMAKKSVFNLSDTDDGDDSSDELPVKSV
SELDAAVYSKKAKATRAEKQTNYLTQEMGASSKRDEGPSILAARQSVFNLSDDDSDDEEE
RRPLGATAHILVRKGILEQIHSGMNGFMPKSSDGFRVETAPASDEELTPEPIINNSPVET
KRKRDNEDKLDQRPFMSLEERFGSSCVKKRRKNSKKKKKRVAMPEAAPVIPAFNYTKALQ
EEKKKREEAKKDEPYDAMQKLRLDWKPDGKGKKRPRKARKHPASGSRSMSFSRR
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atggctcccaagcccgacgccgataaaaaaagctcacatgcaaccgtcccggcgtccaaa
gcgcactgcgtccgcgtcctcaagtcgctgcgacggacggcggtagagtcggacccgctc
ccgcagggcgacgacctagagcttctgcacgcggtatgtccggagacgtctgcgtcgttg
cggcgcgccacgcggcgcgtgcgcgcggccgtgtcggccgcggccgcgtgctacgtgccg
gcggcgacggacccggagtcggagtcgtccgacagcgcgccgagcgtggcggcggaggcg
ctgttcgaccgcgtgcacgaggccaccgacgaggccctggagcagttcaacgccgccctg
gaccgcgccagggggatccaagacgcagagccgctggagacgggcgccgtcgggccggag
accaggctcgggagcgggaggcacagggagtgcgcgtgggtggagatggagaaaccgcag
atggcgtttccagactggccggtggataactcggataccgcgttcgtgccgcccggggtg
gccggggcgaagggggcggacgtggacgtgtacttgcaggagctgtatcaggcgaactcg
aaggcgagtggaggcgagatggaagggaagcatccgtatgaggaagagatccgggcggcg
gaggaggagatggcggcgagagtgtttaagaaggaggacacagttgtgtatcggtctatg
aagagtactccgtgcacgttcatcaagacggaagagaagctttttgaggtggccaaccgg
ttgaagcgagtgggggaggtagcgatcgatattgaaaatcacagtgtcaggtcgtttcag
gggtttacgtgcttgattcaaatgtcgacgaggagggaggacgttgtcgtggatgcgctt
gcgttgagagggtcggtgcatagagcgctggcgcccatttttgccgatgagtcgattgtg
aaagtgttgcatggtgccgataaggacgtgcagtggctggagcgcgatttcggcgtgttc
gttgtcaacatgtttgatacggggcaggccgcgcggttgctcaagtttccgtcggccgca
ctgtcatacctccaggcacggttttgtgatgtcacgggaacgagcaagaagaagtttcag
ctttcagactggcgccagcggccgttgccggatgacatgtttcagtacgctcgctctgat
acgcattatctgttgtacatatatgataggctcaagaccgagctggcggacaaggagttg
actgccaaggcgtggaagcgctcggccgtcgttgcgagaaagcgctacaaaaagactcgg
tacgacggaggcattccgcgccatctttgtgcgaagtatggtcttggatttgatgcccat
caaatacgcctattggaagagctttacggatggcgagaccggaaaggacgggaggaagac
gagagtttgaattatgtggctcctcttggatctctgtttggtattgtgagggcgcgtgac
agggtgcgaactgttgagggactcatgaaatacggttttccttccaaatctgtaccacca
atgatcaaggcaaacgcggatgaaattgtgcgcttgatcgtagattctttggatgcaaaa
cttggtgatcttgaaaagaaatgcgcggcacggcctgctcctattcagtcatccggcgca
ggagacggggccaaggaagttcccaagggcgtcgcaatgcaccggaaagaggcaaaggaa
gggttgccatctgggggaagcttacccttacgcagcaagaccacggcttctacggagcag
ccacaagtcactttgaaagcttctgccctgcgtaaatcgcgtttatatgactctgactcc
tcagattcggatatagatgaagggtcggtgtcaaaagtcgaggtgggcgttctaaacccg
gctcctggcggcgaaggaagcgcaggcggcctctctgtcttaagtcttacgaaacctgac
gcactcgcttcgagtccaagggaattaccgggcccccccgagtctgatccgaatccccga
acccttgctgagaatgccaaacccatttgtacggtgacaatggctaaaaagtcagtgttc
aaccttagcgatactgacgatggcgacgacagcagcgatgagctcccagtcaaatccgtg
tcggagctagacgctgcagtatattcgaaaaaagcaaaagcaacgagagccgaaaaacaa
acaaactacctaacccaagaaatgggagcttcttcgaaacgagacgaagggccttcgatc
ttggcagcaagacagtccgtattcaacttaagcgatgatgatagtgatgacgaagaagag
cgcagacccttgggtgccaccgcacatatccttgttcggaagggcatccttgaacaaatt
cactctggcatgaatggcttcatgcccaagagttcggacggatttcgagtcgaaactgct
ccggcttcagacgaagaattgacccccgagcccatcattaataacagtccagtcgagacg
aagagaaaaagagataacgaggacaaactcgaccaacgtccttttatgtcattggaggag
aggttcgggtcatcatgcgttaaaaagaggcgaaaaaacagcaagaaaaagaagaaacgc
gttgccatgcctgaagctgctcctgtaatccctgccttcaactacacaaaggcacttcaa
gaggaaaagaagaagcgagaagaagcaaagaaggatgaaccgtatgatgcgatgcaaaag
cttcggctagattggaaaccggatggtaagggaaagaaacgtccccggaaggccagaaag
caccccgccagtggatcaaggtcgatgagcttctctcggcgataa
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