KEGG   Chondrus crispus (carragheen): CHC_T00009354001
Entry
CHC_T00009354001  CDS       T02916                                 
Name
(RefSeq) exosome component 1 Csl1
  KO
K07573  exosome complex component CSL4
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CHC_T00009354001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccp03019]
    CHC_T00009354001
Messenger RNA biogenesis [BR:ccp03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     CHC_T00009354001
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     CHC_T00009354001
SSDB
Motif
Pfam: EXOSC1 ECR1_N S1_RRP4 S1
Other DBs
NCBI-GeneID: 17322327
NCBI-ProteinID: XP_005714622
UniProt: R7QAH6
LinkDB
AA seq 189 aa
MEKFVAPGDKVGEVRSYRPGHGVYVHNDILIASLVGTLITEKPTNGETMPLLRVSSSKYA
GGAPPLPDIGSVVTAKITKVTPRAASVEILVIDGRPLRELFKGTIRQQDVRQTEIDKVEI
YKCFAPSDVVRAEVISLGDRHAYFLSTAKNELGVIYAKSRAGVAMIPVNWQEMQCPVSKA
REFRKVAKQ
NT seq 570 nt   +upstreamnt  +downstreamnt
atggaaaagtttgtcgcccccggcgataaggttggagaagtaagaagctatcgccccggt
catggagtatatgttcacaatgacattttgatcgcgagtcttgtagggacactaattacc
gaaaagcctacaaatggagagacgatgccactccttcgagtgtcttcatcaaaatacgcc
ggaggggctcctccacttccagatatcggctcagtcgtcactgcgaagataacaaaggtg
acaccgcgtgctgcaagcgttgagatcctcgtcatcgacggacggccgcttcgcgagttg
ttcaaagggaccatccggcaacaagatgtacggcaaactgaaatagacaaagttgaaatt
tacaaatgcttcgcccctagcgatgtggttcgtgctgaagtcatcagtcttggtgaccga
cacgcatatttcctcagcacggcaaaaaacgaacttggagtaatatacgccaagagtaga
gcgggagtggcaatgatccctgtgaactggcaagaaatgcagtgtccagtctcaaaagcc
cgagaattcagaaaggttgcgaagcaataa

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