Chondrus crispus (carragheen): CHC_T00009354001
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Entry
CHC_T00009354001 CDS
T02916
Name
(RefSeq) exosome component 1 Csl1
KO
K07573
exosome complex component CSL4
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHC_T00009354001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccp03019
]
CHC_T00009354001
Messenger RNA biogenesis [BR:
ccp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CHC_T00009354001
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
CHC_T00009354001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
S1_RRP4
S1
Motif
Other DBs
NCBI-GeneID:
17322327
NCBI-ProteinID:
XP_005714622
UniProt:
R7QAH6
LinkDB
All DBs
AA seq
189 aa
AA seq
DB search
MEKFVAPGDKVGEVRSYRPGHGVYVHNDILIASLVGTLITEKPTNGETMPLLRVSSSKYA
GGAPPLPDIGSVVTAKITKVTPRAASVEILVIDGRPLRELFKGTIRQQDVRQTEIDKVEI
YKCFAPSDVVRAEVISLGDRHAYFLSTAKNELGVIYAKSRAGVAMIPVNWQEMQCPVSKA
REFRKVAKQ
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagtttgtcgcccccggcgataaggttggagaagtaagaagctatcgccccggt
catggagtatatgttcacaatgacattttgatcgcgagtcttgtagggacactaattacc
gaaaagcctacaaatggagagacgatgccactccttcgagtgtcttcatcaaaatacgcc
ggaggggctcctccacttccagatatcggctcagtcgtcactgcgaagataacaaaggtg
acaccgcgtgctgcaagcgttgagatcctcgtcatcgacggacggccgcttcgcgagttg
ttcaaagggaccatccggcaacaagatgtacggcaaactgaaatagacaaagttgaaatt
tacaaatgcttcgcccctagcgatgtggttcgtgctgaagtcatcagtcttggtgaccga
cacgcatatttcctcagcacggcaaaaaacgaacttggagtaatatacgccaagagtaga
gcgggagtggcaatgatccctgtgaactggcaagaaatgcagtgtccagtctcaaaagcc
cgagaattcagaaaggttgcgaagcaataa
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