Chondrus crispus (carragheen): CHC_T00009400001 Help Entry CHC_T00009400001  CDS       T02916                                  Name (RefSeq) DNA-directed RNA polymerase rpb1   KO K03006   DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] Organism ccp  Chondrus crispus (carragheen) Pathway ccp03020   RNA polymerase ccp03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:ccp00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     CHC_T00009400001   09124 Replication and repair    03420 Nucleotide excision repair     CHC_T00009400001  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:ccp03021]     CHC_T00009400001    03400 DNA repair and recombination proteins [BR:ccp03400]     CHC_T00009400001 Enzymes [BR:ccp01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      CHC_T00009400001 Transcription machinery [BR:ccp03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Core subunits      CHC_T00009400001 DNA repair and recombination proteins [BR:ccp03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       CHC_T00009400001 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_4 Phage_zn_bind_4 Motif Other DBs NCBI-GeneID:  17326230 NCBI-ProteinID:  XP_005718513 UniProt:  R7QLG5 LinkDB All DBs AA seq 1806 aa AA seqDB search MGRSAFPWSWAPTRHVDSVQFGVLSPDEVRRMSVAEIKEERLYENGEPKHEGLVDSRLGS NAHFRCTTCHGDDQTCPGHFGHIELAKPMYNVGFVNTTLKILRCVCYYCSKILCNDANVE LLLRVKKPVDRLRKALLTCSKGKSVCSEETGCGHEQPKYSREAFRIKALLKESGETGTES KETLDGSKVYAIFKRISDRDCRAMGFSPEFSRPEWFLVSLLPVPPPHVRPSVMRNGSRNE DDLTSKLGDILRNNNLLKTLESTGAVAHVLKEQEALLQYHVVTYMNNEFAGVIPATVKGG GRNIKSIGQRFKGKEGRVRGNLMGKRVDFSARTVITPDPNLKLHEVGVPISIAMNLTYPE IVTPFNREDLTKLVMRGPHSHPGVNYIESEDRVFSLYFQNPADIQLTVGMKVFRHIRDGD YVLFNRQPSLHKMSIMGHRIRVLPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSHLTRAE VQELMLVPHCIVSPQGNKPVMGIVQDTLLGCMLFTQRDTFLERDLTMNLLMHVGDWDGVI PEPAIYKPRPLWTGKQIFSLILPAVNLVRFNITHPDDENTDISPGDTKVYISRGELVCGI VDKRTVGTSANGLIHVTWKQCGAKTTDKMISQIQVLVNHYVLQRGQSIGIGDTIADTATM SNVIRTIQSAKEEVKLLVRKAQEKELVLLPGKGMMESFETEVNKVLNGARDKSGASAQKS LLKSNNIKRMVSAGSKGSFINISQICACVGQQNVEGKRIAYGFNRRTLPHFVLDDLGPES RGFVENSYLRGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMEDVMVRYDGTV RNSVNHIVEFLYGEDGMDATFLEDQFLRTYKMSDRQLRDEYYLNPMDPGFGRDSKGRPYL DTEITEGVRQDAQIHLELKAEFSQIQSDRETLRHEIVKNGEAKRPLAVNVDRVIWNAKQE HNIRPDSVSDLNPDQILKGVKMLMKRTRVIVLGDEDEEEANATRNDDEGNVEDRKPTLVD PIAREVQENATLLFQIHLRSMLACKKIIKEHRLTKKAFVWVLGEIETRFLSCRVAPGENI GAIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKNTKTPSLTVYLKPEF AADKEKAKEIQASLQHTTLRDVTQCTEIYYDPDPSRTVVAEDEEMVSSFFEIEDVPHAAS PWLLRIVLDKDMLQDRSISMDQIERIVYQNFGSDVHVIRSQDNDERIVLRLRVTDEAARD KYGENGNGGEMDDDEEEDDEDSDNAFLKRLESELLSEMNLGGISRIRKVFMRQSRTTYVD ESVGRFKSREEWVLDTDGVNLIAVMSHEAVDHTRTTSNDIVEIFEALGIEAVREALMNEI RGVISFDGAYVNYRHLAILVDTMTYRGHLMAITRHGINRVDTGPLMKCSFEETTDILLEA AQFGEKDHLRGVSENIMLGQLPPIGTGSFKLLLNEDKLKDAIEPEAAQEQVAVGSPLGVV GGGFESGAWSPGRPMATPGRKRTFDARATPGNAYSPAAWQTPNRMGSTRGASPFNMQFSP TADDAQFSPMPATPGGAGVGGGGYTPLQSPGREYVTPLSPGGAASPYHNQSPAYASSPGY AASPAAGGAGGYGAGANTFAPASPGYRLTSPGPSAYAMAQSPGAQSPGAQYSPTSPGFSP TSPAYTPSGAVAGAAAGGASYSPTSPSYNAPGAASPAAGGYGGGSASLAYSPSSPAAYSH SSPGFAPSSPAGGYAPSTPAYAAQSPGANRYNSYGRGSNHYSPSFANNASPSSPQYSPSS PQYSPR NT seq 5421 nt NT seq  +upstreamnt  +downstreamnt atgggtcgctcggcctttccctggtcgtgggcacccacccgacatgtcgattctgtgcaa ttcggcgtgctaagcccggatgaagtgcgacggatgtctgttgcggagatcaaggaagag cgtctctacgaaaacggcgaaccaaagcacgagggtctcgtcgacagtcggcttgggtcc aatgcacatttccgctgcactacttgtcacggtgatgaccagacttgccctggtcatttt ggccatatcgagcttgctaagcccatgtacaacgtgggctttgtgaatactaccctcaag attctgcgctgcgtgtgttattattgttcaaagatattatgcaatgacgcgaacgtcgaa ctactactgcgagtcaagaaacctgtggatcgtctgcgaaaggcgttgcttacatgttcg aagggcaagagtgtctgttcagaggaaactggatgtggacatgagcagcccaagtactct cgtgaagcttttcgaatcaaggcgcttttgaaggaaagcggagagacagggactgagtcc aaggagacgttagatggcagtaaagtctatgccatcttcaagcgaatcagcgacagagat tgccgagcaatgggattttccccggagttttcgaggccggagtggtttcttgtctctttg ctccccgtgccaccaccacatgtccgtccttctgtcatgcggaatggatcacgaaatgaa gatgatctgacgagcaaacttggggacatcttaagaaataacaacctcctcaagactttg gaatctacgggtgcagtcgcacacgttctcaaagaacaagaagcactgctgcagtaccac gtcgtcacatacatgaacaatgagtttgcgggtgtcattccggccactgtaaaaggaggg ggtcgcaatattaagagtataggacaacgtttcaaaggcaaagagggtcgtgttagagga aatttaatgggaaagcgagtagacttcagtgcccgaactgtgattactccagatccaaac ctgaagctacacgaagttggggtgcccatttcaattgcgatgaacttgacatacccggag atcgttactccgtttaatcgggaggatttaaccaaactcgtcatgaggggtccccattcg catcccggtgtcaattatattgaaagcgaagatcgagtgttcagtctatactttcagaat cccgccgacatccaattgactgtcggaatgaaggtctttcgtcatattcgggatggcgac tacgtgttgtttaaccggcagcccagtctacacaaaatgtcaattatgggtcatagaatt cgcgtgcttccctactcaacgtttcgcctcaacctttccgtaacatcgccttacaacgct gatttcgatggagatgagatgaacttgcacgttcctcagagccacttaacgcgcgcggaa gttcaagaactgatgcttgtgccacattgcattgtatcaccccaagggaacaagcctgtg atgggcatcgtgcaagatactttgcttggatgcatgctcttcacacaaagggacacgttc ttggagcgagatctgacaatgaacctgctcatgcatgttggcgattgggacggagtaata ccagaacccgcgatatacaaaccacgacctctctggactggcaagcaaattttctcgttg attcttcctgctgtgaatttggttcgcttcaacatcactcaccccgatgatgagaacacc gacatttctccaggtgatacaaaagtgtacatctcacgaggggagctggtatgcggtatc gtagacaagaggactgtgggaacatccgcgaatggcctaattcacgttacttggaagcaa tgcggtgccaaaacgactgataagatgatctcgcagatccaggtgctggtgaaccactat gttcttcagcgagggcagtccattggaattggagacacgattgcagataccgcaacaatg agtaatgtaatcagaaccattcaaagtgcaaaggaagaagttaaattgcttgttcgcaaa gctcaagaaaaggaactagttctccttcccggtaaaggaatgatggagtcatttgaaact gaagtgaacaaggtgctgaacggcgctagagataagtctggtgcctcggctcagaaatcg cttctgaagtccaacaacatcaaacgaatggttagcgccgggtccaagggttccttcatc aatatttcacaaatttgtgcttgcgtaggccagcaaaatgttgaaggaaaacgcattgcg tacgggtttaacagacggaccttgcctcactttgtcctggacgacttgggacctgagagt cgtggtttcgtggagaactcgtatctacgaggtttgaccccgtcggagtttttctttcat gcaatgggaggtcgagagggtctgatcgatactgctgtgaaaacagcagagactggttac atccaaaggcgtcttataaaggcgatggaagatgtcatggttagatatgatggaaccgtg aggaattcggtcaaccatattgttgagttcctttatggagaagatggaatggacgcaacc tttttggaggaccagttcttgcgaacttacaaaatgtctgatcgtcagttgcgcgacgaa tactatctaaatccaatggatccaggatttggtcgcgactcgaaaggccgtccatatttg gatacagaaattacggaaggcgtgcggcaagacgcccagattcatttggagttgaaggca gagttcagtcaaattcaatctgatcgtgagaccctgaggcatgaaattgtcaaaaacggt gaagccaaacgtcccttggccgttaatgtagacagagtgatctggaatgcaaaacaggaa cataacatccgccctgactcggtttccgatcttaatccagaccagatcttgaagggggtg aaaatgctgatgaagaggacgagggttattgtcctaggcgatgaagacgaagaagaagcg aatgccactcggaacgacgatgagggcaatgttgaagaccgcaaaccaacccttgtggac cctatcgcccgcgaagtccaggagaatgcaacacttctgttccaaattcacctccgctca atgttggcatgtaagaagatcatcaaagaacacagactcacgaagaaagcctttgtttgg gtgcttggtgaaattgagacacgcttcttaagttgccgggttgctcctggagagaatatt ggtgctattgctgcgcagtcaattggagagcctgcgactcagatgactctcaatactttt cattacgcaggtgtctctgccaagaatgtcacccttggcgtgcctcgtttgaaggaaatt atcaacgtttccaagaatactaaaactccctctctaacagtttatttgaaaccagagttt gctgctgacaaggagaaggcaaaggaaatccaggcgtctctgcagcacacgactctgcga gacgttacgcagtgcacagaaatctactacgatccggatccatctcggacagttgtggcc gaagatgaggaaatggtttcaagctttttcgaaattgaggacgttccccatgctgcgtcg ccttggttattgagaattgtgctggacaaagacatgctacaagatcggagcatcagtatg gatcagattgaaagaatagtgtatcaaaactttggcagcgatgtacacgtcatcagatcg caagacaatgatgagcgcatagtacttaggctgcgtgtgacagatgaagcagcgagagat aaatatggcgaaaatggaaacggcggcgagatggatgacgacgaggaagaagacgacgaa gactctgacaatgccttcttgaagcgcttagaatcagagctcctgtctgaaatgaacctc ggaggcatctccagaatccgcaaagtattcatgcgccaatctcgcaccacctacgtggac gaaagcgttggacgctttaaatcccgagaagaatgggtgttggatacggatggtgttaac ctgatagcagtcatgtctcacgaggccgttgaccacacccgaacaacttcaaatgacatc gtagagatcttcgaggctttaggcattgaggcggtccgcgaggcactaatgaacgaaatc cgtggagttatctcctttgatggagcctatgtgaactatcgacatttggcgatcctcgtg gacacaatgacttatcgaggtcacctgatggcaattacgaggcacggtataaaccgagtt gataccggtcccttaatgaaatgttcttttgaggaaacaactgatattctgcttgaggcg gcgcagtttggtgaaaaggatcacctacgaggtgtgagtgaaaacatcatgctcggtcag cttccacctataggaactgggagctttaaacttttactcaacgaggacaagctgaaggac gcaatcgaaccagaggcagctcaggaacaagtagcagtggggtcacctcttggagtggtt ggtggggggttcgaatctggagcgtggagcccagggcgaccaatggccacgccaggacga aaaaggacattcgatgcccgggcaacaccagggaacgcatattccccagccgcatggcaa acaccgaatcgcatgggatccacgagaggggcatcgcctttcaatatgcagttttctcca actgctgatgatgcgcagttttctccgatgcccgcaactcctggtggtgcaggggtcggt gggggtggctacactcctttgcaatctcctggccgtgagtatgtgacaccgttgagcccg ggtggtgcggcaagcccttaccacaatcagagccctgcgtacgcttccagtcctggatat gcagcaagccctgcagcgggaggagcgggtgggtatggtgctggtgccaacacgtttgcg cctgcaagtccgggctacaggttgacatcgcctggaccaagtgcatacgccatggcgcaa tcaccgggtgcacagtcacctggggcacagtactcaccgacaagtccagggtttagtcct acgagtccggcctacactccgagtggtgcggtggcgggggctgccgctggtggagcaagt tactctccgactagtccaagctacaacgcgcctggagccgcttcaccagcggctggtggc tacggcggagggtcggcgagcctagcgtacagtccgagctcaccggcagcctatagccat agctcccctggattcgctccaagctcaccagcgggtgggtacgcgccatctacaccagca tatgcagcgcaatcgccgggtgccaatcggtacaactcctacggacgagggtcgaatcac tactctccatcgtttgcgaacaatgcatctccgagttcacctcagtactccccttcctct ccacaatattcacctagatga

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