KEGG   Chondrus crispus (carragheen): CHC_T00009547001
Entry
CHC_T00009547001  CDS       T02916                                 
Name
(RefSeq) RNA polymerase I, II, III common subunit
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03020  RNA polymerase
ccp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CHC_T00009547001
  09124 Replication and repair
   03420 Nucleotide excision repair
    CHC_T00009547001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccp03021]
    CHC_T00009547001
   03400 DNA repair and recombination proteins [BR:ccp03400]
    CHC_T00009547001
Transcription machinery [BR:ccp03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     CHC_T00009547001
  RNA polymerase III system
   RNA polymerase III
     CHC_T00009547001
  RNA polymerase I system
   RNA polymerase I
     CHC_T00009547001
DNA repair and recombination proteins [BR:ccp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CHC_T00009547001
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N
Other DBs
NCBI-GeneID: 17323841
NCBI-ProteinID: XP_005716123
UniProt: R7QDZ3
LinkDB
AA seq 217 aa
MDEESTEQDISRLFRIRRTILEMLSDRGYAVLNSEEDLLQPREVFAREFITQNYNRESLT
LLRQKKDDDKDQIYVFFPEEIKNKPLGVKPLLERGKRMERDGVRHAIIVLETGLTPYAKK
TVAELNSGDQARMEIFIENELIVNITKHILVPKHDVLSADEKKALLRRYKLKESQLPRIQ
KTDPIARYYGLTHGNVVKITRPSETAGRYVTYRLCVG
NT seq 654 nt   +upstreamnt  +downstreamnt
atggatgaagaatctactgagcaagatatctctcgtttattccgaattcgacggacaatc
cttgaaatgttatcggaccggggctacgcagtgctaaattcagaggaagatcttcttcaa
ccgcgtgaagttttcgctcgtgaatttataactcagaactacaacagagaatcccttacg
ctcttgaggcaaaagaaggatgatgataaggaccaaatatacgttttcttcccagaagaa
atcaaaaacaaacccctgggtgtcaaacctctcttggaaagagggaaaagaatggaaagg
gatggcgtacgtcacgcgattattgtcttggaaacaggtctcactccgtacgcgaaaaaa
actgttgccgagctcaactctggagaccaggctcgaatggaaatttttatcgaaaacgaa
cttatcgtgaacataaccaaacatattcttgtgccgaagcacgacgtcctttctgccgac
gagaaaaaggcgttgctccgacgctataagttgaaagagagccagctgccgagaattcag
aaaaccgatccgatcgcaagatactatgggcttactcatggaaacgttgtcaaaatcacc
cggccatcagaaactgccgggcgatatgtcacgtaccggttgtgtgtgggatag

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