Chondrus crispus (carragheen): CHC_T00010011001
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Entry
CHC_T00010011001 CDS
T02916
Name
(RefSeq) Cleavage and polyadenylation specificity factor, 73kDa variant
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CHC_T00010011001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccp03021
]
CHC_T00010011001
03019 Messenger RNA biogenesis [BR:
ccp03019
]
CHC_T00010011001
Transcription machinery [BR:
ccp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CHC_T00010011001
Messenger RNA biogenesis [BR:
ccp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CHC_T00010011001
U7-dependent histone pre-mRNA processing factors
CHC_T00010011001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-Casp
CPSF73-100_C
Lactamase_B_6
Lactamase_B
Anti-Pycsar_Apyc1
RMMBL
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
17320789
NCBI-ProteinID:
XP_005713072
UniProt:
R7Q5H0
LinkDB
All DBs
AA seq
686 aa
AA seq
DB search
MADAMENEMQIMPIGAGNEVGRSCCILKFMGKTIMFDCGVHPAYSGISSLPFFDYIEAQE
IDLVLITHYHLDHAAGLPFLMERTNLNPEARVFMTQPTRAIYKALLSDFVRVSRNAPGEE
SLYTEDDVNRTMSRIEVADYHAEVNVKGIKFRPFYAAHVLGGAMFMVEIAGVRVLYTGDY
SREEDRHLKAAEIPPFRPDVLIVESTYGIQEHEPRGIREKRFTDRVARVVRGGGRVLLPV
FALGRAQELLLILDEFWEAHPDLHHVPIYYASAIAQRCMPVYQTYVNMMNDNVRRRFEIS
NPFHFKHVKNIKGMNQFADDGPCVFMASPGMLQNGLSRELFERWCTNKQNGLVLSGYSVE
GTLAKKVLTEPETITKLDGRQARLNCSVDYITFAAHADFKETRMFVEELKPDHCVLVHGE
KNNMARLKGALDTIHNKTEGGRKLDLHSPLNCGVVKLKFKNEKMAKAIDVLPLAAEEKPK
PGTKVSGLLIQQEFSYTLVKPQDLPQYTSLKLSQIDQRQVLPLKKSLVTLATQLNTIFRG
VRFDEEGKVISMAKGSVLIVQKDEHSVQMAWASGYASDILTEAIAAITISDSPHAGEPGV
SETLKLGRKLLAARFGKTHSIKGFPHKVRMVVDLTKVTVNMLTGEVDCADETVRNRVLLA
YRRIQAAMFPIPEYYCDCCQPTTHVQ
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgcaatggagaacgagatgcagattatgccgatcggtgctggcaatgaggtt
ggtaggtcttgctgcattttgaaatttatgggcaagactattatgtttgattgcggcgtc
cacccggcctactctgggatttcatccctgccattttttgactatatcgaggcacaagag
atagaccttgttcttatcacgcactatcatcttgaccacgctgcaggcctcccttttctt
atggagaggacgaatctgaatcccgaggcaagggtattcatgacccaaccgacgcgagca
atatacaaagctttactctccgatttcgtcagagtatctcgaaacgccccaggtgaagaa
tctctgtacactgaagatgacgtaaatcgcaccatgtcgcgtattgaggtagctgactac
catgccgaagtaaacgttaaggggatcaaattccgaccattttacgcagctcacgttcta
ggcggcgccatgtttatggtcgagattgctggtgttcgcgtcttatatactggagactac
tcgagggaagaggacaggcatttgaaggcagccgaaattcccccgtttcgacctgatgta
ctcatcgttgaatctacttatggcattcaagagcatgagccccgaggcattcgagaaaag
cgttttacagatcgcgtggcacgagttgtgcgagggggtggcagagttttactgccggtg
tttgcactcggaagggcgcaagaattgctactcattctcgacgaattttgggaagcacat
ccagacctgcaccatgtgccgatatactacgccagcgcaattgctcagcgatgcatgccc
gtgtatcagacatatgtaaacatgatgaatgacaatgtgaggcgaaggttcgagataagc
aacccatttcatttcaagcacgttaagaacatcaaaggcatgaatcagtttgccgatgat
ggaccgtgcgtgtttatggcctccccaggtatgcttcaaaacggtctgtcacgagagctg
ttcgagagatggtgcaccaacaaacagaacgggcttgtgctcagtggatattcggttgaa
ggcacactggcaaagaaggtgctgacagaaccagaaacaatcacaaaattagatggtcgt
caagctagactcaactgttcagtcgactacattacatttgcagctcatgccgactttaag
gagacccgaatgtttgtggaagaactgaagcctgatcattgcgtcttagtacatggggaa
aagaacaacatggctcgtctgaagggagctttagatacgatacacaacaaaactgaagga
gggcgaaagcttgatctccattcgcctttaaattgtggcgttgttaaactcaagttcaag
aacgaaaagatggcaaaagccatcgatgttcttcctctagctgctgaggaaaagccgaaa
ccaggcaccaaggtatctgggttactcatccagcaagaattttcctacactttggtgaag
cctcaagacctcccgcaatatacctcgttaaagctttcgcagattgatcagcgacaagtg
cttccattgaagaaatccctcgtcactcttgctacacagttgaacactatatttcgaggc
gtaagattcgatgaagaaggcaaagtcataagcatggcaaaaggatcggtgttaattgtt
cagaaagatgaacattcggtacaaatggcttgggccagcggatacgcgtccgacattttg
accgaagccattgctgcaatcacaatatcagattcaccgcatgctggggaaccgggtgtc
agcgagacgttgaaactgggacgaaagttattggcggctcgtttcggaaagacgcattcg
ataaagggctttccgcataaagttcgcatggtcgtggacctgacaaaagtaactgtgaat
atgctgactggggaggtagactgtgcagatgagactgttcgaaatcgagtgctgctagcg
tataggcgcattcaggccgctatgttccctattcctgaatattactgtgattgttgtcaa
ccgacaacccatgttcaataa
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