KEGG   Chondrus crispus (carragheen): CHC_T00010012001
Entry
CHC_T00010012001  CDS       T02916                                 
Name
(RefSeq) exosome component 6 Mtr3
  KO
K12587  exosome complex component MTR3
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CHC_T00010012001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccp03019]
    CHC_T00010012001
Messenger RNA biogenesis [BR:ccp03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     CHC_T00010012001
SSDB
Motif
Pfam: RNase_PH RNase_PH_C UreF DUF6511
Other DBs
NCBI-GeneID: 17318631
NCBI-ProteinID: XP_005710910
UniProt: R7QSX7
LinkDB
AA seq 264 aa
MRYGPLCRVTAAPKPKTSEAHKRSDGRTGWEELRPVFLKASFLSSAAGSAYFEAGGTKVF
CAVHGPRAWASSSIDAVVHCEVRWAHFSGRREETRTAAGGERSRPSESATDEERELGASL
ARTLGTVTRVEMYPKSRIEVSALVLEDDGSSFAAVVTAAALAMADAGIEMADLTAAMTAA
VVDGNVVVDPNAEEERRASGTVMVAYMGNVGKVTDLVQTGEMEIGQLAHAIQTGCQAATQ
VRGLIKACLEKQAGKVLKKRGRGA
NT seq 795 nt   +upstreamnt  +downstreamnt
atgagatacggaccgctgtgccgcgtgacggccgcgccgaaacccaagacaagcgaggca
cacaagcgcagcgacgggcgcacgggttgggaagagctgcggccagttttcctaaaggcg
tcattcttgtcctccgcggccggttcggcctacttcgaagccggaggcacaaaagtgttc
tgtgcggtgcacggcccacgcgcgtgggcgagctcgtcgatcgacgcagtagtgcactgc
gaggtgcgatgggcgcacttctcggggcggcgcgaggagacgcggaccgcggcggggggc
gagcggtcgcggccgagcgagtccgcaacggacgaggagcgcgagctgggcgcgtcgctc
gcccgcacgctaggcacggtgacgcgcgtggagatgtaccccaagtcgcgcatcgaggtg
agcgcgctggtgctggaggacgatgggagctcgttcgcggccgtggtgacggcggctgcg
ctggcgatggccgacgccggcatcgagatggccgacttgaccgccgcgatgaccgctgcc
gttgtcgacggcaacgtcgtggtcgatcccaacgcggaagaggagcggcgcgcgtcgggc
acggtcatggtggcgtacatgggaaacgtcggaaaggtgacggacctcgtgcagacgggc
gagatggagatcgggcagttggcgcacgcgatccagaccgggtgccaggcggcgacgcag
gtgcgcgggctgatcaaggcgtgcttggaaaagcaggcgggcaaggtgctgaagaaacgc
gggcgcggggcgtag

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