Chondrus crispus (carragheen): CHC_T00010014001
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Entry
CHC_T00010014001 CDS
T02916
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide
KO
K14778
ATP-dependent RNA helicase DDX49/DBP8 [EC:
5.6.2.7
]
Organism
ccp
Chondrus crispus (carragheen)
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccp03009
]
CHC_T00010014001
Enzymes [BR:
ccp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHC_T00010014001
Ribosome biogenesis [BR:
ccp03009
]
Eukaryotic type
90S particles
Helicases
CHC_T00010014001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
RBD
Actino_peptide
AAA_22
Motif
Other DBs
NCBI-GeneID:
17319030
NCBI-ProteinID:
XP_005711317
UniProt:
R7QTL2
LinkDB
All DBs
AA seq
464 aa
AA seq
DB search
MRKGPRRSTPVRRRHCLHLLGVGRPSPKYATAFTRMAAFAALGISSWLQRACKTLGILTP
TPVQRACIPAILSGRDVVGAAETGTGKTAAFVLPILDAVGRDPYGIAAIILTPTRELAFQ
IAQHVSALGAPIGIREYTLVGGVHELAQAAALEKRPHVVVATPGRLALMIRRGVVDLARV
RFLVLDEADRLLDPSYVDDLKAVVGECDSEKRQTLMFSATMTASLRELQEVAMGANAMRF
DARENRYATVEGLMQTYLFVPQHLKECYLVYLLKERFEKESVIVFVSRCETAELIVAMLN
LLGMKKVAALHSDMKQTRRIEALQKFKGQSVRALVATDLASRGLDIPACEVVVNYDVPRQ
AATYVHRVGRTARAGKEGIAVSFVTQSDVELVHAIEARTEKKLEKIEDVKEELVMKELSN
TLKARQIVKMNLDESGFLEQGDAKREGARKRAKRRKKERSKTSK
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaaggtccacgtcgcagcacacccgttcgacgtcgacattgcttgcatctcctc
ggagtaggccggccctctcctaagtacgccacggccttcacaagaatggcagctttcgcc
gcgctaggcatttcttcctggcttcagcgcgcctgcaaaactttgggcatcctcacgccc
acccccgtgcaacgtgcctgcatccccgccattctttcgggacgcgatgtagtcggcgct
gccgaaacgggcacaggcaagactgctgctttcgtgctaccaatactggacgcggtgggt
cgtgacccgtacggaattgcggccataatcctcacgccaacccgcgagcttgcgttccag
atagcgcagcatgtgagcgcattgggcgcgccgataggcatcagggaatatacgcttgtg
gggggagtgcacgagctcgcacaggcggctgcactggagaagaggccgcatgtagtagtg
gcgacgccggggagacttgccttgatgattcgacgtggagtggtggatctggcacgtgtg
aggtttttagtcttggacgaggcggatagattattagacccaagctatgtggacgatttg
aaagctgtggtgggagaatgcgactcggagaagaggcagacgctcatgttttccgcgaca
atgacggcatccctgagggagttgcaggaggtggcgatgggagcgaacgcgatgcggttt
gacgcgcgtgagaaccgttacgcaacagtggaggggctgatgcaaacatacttgtttgtg
ccgcagcatctgaaggagtgctaccttgtttacttgctgaaagaaaggtttgagaaggag
agtgtcatcgtgtttgtgagcaggtgcgagactgcagagctgattgtggctatgctaaat
ttgctggggatgaaaaaagtggctgcgttgcactcggatatgaaacagacgcggaggatc
gaggcgctgcagaaattcaagggacagagtgtgcgagcgttggtggcgacggacctcgcg
tcgagggggctagatattccggcatgcgaggttgtggtgaattacgacgtaccgagacaa
gcggcgacatacgtgcatcgcgtggggagaacggcccgcgctgggaaggaggggattgcc
gtgagctttgtgacacagtcagatgtggaattggtgcatgccattgaggcgaggactgag
aagaaattagagaaaatagaggacgtcaaggaggagttggtcatgaaggagttatctaat
acgttaaaggctaggcaaattgtgaagatgaacttggatgagagtgggttcttggagcaa
ggggacgctaaacgggaaggtgctaggaagagagcgaagagacggaaaaaggaaaggagc
aagacttctaagtag
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