Chondrus crispus (carragheen): CHC_T00010016001
Help
Entry
CHC_T00010016001 CDS
T02916
Name
(RefSeq) RNA splicing factor (Pad-1), putative
KO
K13091
RNA-binding protein 23/39
Organism
ccp
Chondrus crispus (carragheen)
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccp03041
]
CHC_T00010016001
Spliceosome [BR:
ccp03041
]
Common components
Common spliceosomal components
General mRNP proteins
CHC_T00010016001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RBM39linker
RRM_8
RBD_DEAH11
DUF1866
Motif
Other DBs
NCBI-GeneID:
17326754
NCBI-ProteinID:
XP_005719036
UniProt:
R7QP11
LinkDB
All DBs
AA seq
649 aa
AA seq
DB search
MVLEESPPHRAMRRPRSRTPRTRRSPSPKRSPSYSPPPRRRRRSRSPPMRARDDSSFDSQ
SFSSYSSMSRSPPPRRRRTRLSPRRRRSPASSASYSSFSSRSPPPRRRPSRSRRRSLTPP
PPRRYRSRYSPPQRYRAVSPPPRRRRHAPRNDRRDERPADTRRDKPLRGDDRARDLRTVF
VSQLAQRVHQDDLYDFFSRAGRVRDVRLVMDRMSSRHKGAGYVEFYEEESVPLAVAFDST
SLRGFPVAVKATVDMAGRLQGRKVQTASKEMQGKPVDIPAQAANPLKAHDDSVVGWSNKY
RARKPDADAFSAGAVPRAHAGARVPQSSQVPQLVSIEELKRLLNPLGLPIAPPPLTAMGV
GVNVGAAGQPLEQVPLPTAGSAKIAPQPSASSGAFTRLYVGSISFQLTEADLRAIFEPFG
AISSLQLQRDATGSSRGYGFVEFLTHESAKKALEINGLAVAGRTLKVALASQEHRMAVSS
TAADRNLMGSVPLPGPGGAALDVPGELDEGKDSGLAINASQRIALMQQLSRGESIGKTGT
NAGKLPVCAEPSKNIMLANLFDPATEQEGFELDLKEDVRDECISKYGAVAHLVVEPKSQG
VVFVRFQARSDAEKARTALNGRWFGGRRIQASFVGDKDYMEKFPSATNE
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggttctagaagagtctcccccacaccgcgcgatgcgccgcccgcgctcccgcaccccg
cgcacccgccgctcgccctcccccaagcgctcgccctcctactcgcccccgccgcgccgc
cgccggcgctcgcgatctccgccgatgcgcgcgcgcgacgactcctccttcgacagccag
agtttctcgagctactcgtccatgtctcgctcgccacccccgcgtcgccggcgcacgcgc
ctctcgccgcgccgccgacgctcgccggcctccagcgcgtcgtacagctcgttctcgtcg
cgcagcccgccgccgcgccgaaggccgtcacgatcgcgaaggaggagcctcaccccgccg
ccgccgcgtcggtaccgctcgcgctactccccgccgcagaggtaccgcgccgtgagcccg
cccccgcgccgacgccgccacgccccgcggaacgaccgcagggacgagcggccggcagac
accaggagggacaagccgctgagaggggacgaccgcgcgcgcgatttgcgcaccgtcttc
gtgtcgcagcttgcgcaacgcgtgcaccaggacgatttgtacgacttcttttcacgtgct
ggccgcgtcagggacgtcaggttggtcatggatcgcatgtcgtcgaggcataagggggct
ggatatgttgagttttacgaggaggagagcgtgccgttggcggtcgcgtttgatagtacc
tccttgcggggatttcctgtcgccgttaaagccaccgtagatatggctggcaggctacaa
gggagaaaagtgcagactgcatcgaaggaaatgcaggggaaaccggttgatatccccgca
caggcagcaaatcctcttaaggctcacgacgattccgtcgtaggctggtcgaacaagtat
cgagctcggaagccggatgcggatgccttttcggcgggggcagtcccacgtgcgcatgct
ggcgctcgcgtcccacagtcctcgcaagtgccgcagctcgtgtcaattgaagagctcaag
cgcctgctcaatccgctcggtcttccaattgcgccacctccgctgacagccatgggcgtg
ggagtcaacgtcggcgctgcagggcaaccgctggaacaggttcccttgcccaccgctggt
agcgcgaagatcgcaccccagccgtcggcttcctcaggtgcattcacacgcctatacgta
ggttctatatctttccaacttaccgaagcggatctcagggcaattttcgagccttttggg
gcaatctcctcattgcagctacagcgagatgcgaccggcagctcacgtgggtatgggttc
gtagagttcctgacgcatgagtcagcgaagaaagcccttgaaattaacggacttgccgtt
gctggacgaaccttgaaagttgcgttggcgagccaagagcatcgcatggcggtttcctcg
acagcagcggatagaaatctcatggggagcgtcccgcttccagggccagggggagcggca
cttgacgtacccggagagctggacgaagggaaagatagcgggctagcgatcaacgcgtct
cagcgtatcgctttaatgcaacaattatctagaggggaaagtatcggcaaaacagggacc
aatgccggaaaattaccggtctgcgcagagccctccaagaacataatgctcgcgaattta
tttgatcccgcaaccgagcaagaagggtttgagttggatttgaaggaggacgtaagggac
gaatgcatttcaaagtatggggctgtcgctcatctcgttgttgagccgaagagtcaaggc
gtcgtattcgtcaggtttcaggcgcggagtgatgcagaaaaggcccgaactgcgctaaac
gggaggtggtttggagggcgacgcatccaggcttcgttcgtaggagataaggactacatg
gaaaaattcccaagtgccacgaacgaatag
DBGET
integrated database retrieval system
