Chondrus crispus (carragheen): CHC_T00010052001
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Entry
CHC_T00010052001 CDS
T02916
Name
(RefSeq) DNA polymerase alpha catalytic subunit
KO
K02320
DNA polymerase alpha subunit A [EC:
2.7.7.7
]
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03030
DNA replication
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CHC_T00010052001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccp03032
]
CHC_T00010052001
Enzymes [BR:
ccp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CHC_T00010052001
DNA replication proteins [BR:
ccp03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase alpha / primase complex
CHC_T00010052001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-DNA_Pol
DNA_pol_B_2
DUF7164
Motif
Other DBs
NCBI-GeneID:
17318260
NCBI-ProteinID:
XP_005710544
UniProt:
R7QS87
LinkDB
All DBs
AA seq
1371 aa
AA seq
DB search
MLDADFDSHMKQSRAARRKKKTAVQRAIGDMLFDTPAEPAPHPILQADSPRDDYAAPPPS
LTKPAVEPVIQVEPNPVQTAYLEDSLDADMLVAAADAAVKQRMAAPKPPVAPKRVPAATF
AERSAARIASAVAPAPVAPNAPLARGPDGEVIMFWTDAHEMRVNGGQHLYMFGKVPVGTL
DSGVYASVCVQVQGMERKLYVLPRMHKVDARGRPTKEPVKIVPDVHAEISAILLGKSSGD
GKGFAARRSGSNLPSTIMAKKVMRSCPFGDTHAPREATEYLKVKIPFSNTSNLFPESSGK
TFSRVYGTKTSASEDLCMKRRLRGPGWVRLTNATPMQSKVSHAKCSLTIPSPMDVTVAND
MSDKDPPPVSALCLNAKTTLNPKTGAHEIVMLAGVFVRGVPLSGPLPENALEPDGPTGTR
DFILVRAPDGQSVPFGFSDRARSVLARGGGVEVAPNESVLLNSFLSKLLRLDPDVLLGHD
LMGFGLDVLIARMNVRRSREWSRLGRLVQRRDLSHVVKNNSSSSWFKSEAVAGRLVVDTY
SYAKELLTREKDYSLSALSRNVLGGHLLGGTSGHLPPTTDVSKVPAAFDSTDSLCNLVFE
CSLEARTAGRLAAHLSVLPLSRQLTCISGNLWSHTLRGARAERIEYLLCHEFKLIGAKNT
GTSGKAGDIGSKLLLPDKLTKAERVRLGKQFEEEQNANAPRPPPGGAEAEIDGAEGATPK
ASAKSAKSKSARRKPQYSGGLVLEPKKGFYDRYTLQLDFNSLYPSIIQEFNICFTTLDLA
KHKEKSASELEAPFAQGSPDEGVSGADGSAMMNLPNKSLLEGVLPRVLRRLVEQRRQVKK
LLKEERLKAGKETLRAQQLDIRQLAIKLTANSLYGCLGFEGSRFFARPLAEMVTCQGRDT
LQKTVDLARDSFNAQVIYGDTDSLFVYTGLDDINRVRKLGTELKREVNKKYRTLEIEIDA
IYKKMLLLKKKKYAALKVVDPNNPDKVVREVKGLDLVRHDWCDLSHDASEHFLQQIFQIQ
AADIDDAVGNIVTFLGELAKRVNNNEISLSKYVITRCLTKRPQDYPEGGGLPHVTVAIRL
INEHKKRIKPGDYIKYVVCLNAADGEQSSSGSKSVAQRAYHPDEVIASEGKLVIDLKYYL
ENQVLPPIMRLCDPIESIEASRIAVSLGLDGRRYERKTYDMDSGNYLALGPQSAAEKFQD
VDPLMACCVNCGAQSEFQGVLFKSSGKAIQTAGLDCCKCNRRFSSATLANIITLALRTWT
SKYYTSALQLNGDDGSRKRETRNIALGGNGALARRKFDEAWLYKQLRYLRFLVDVPGRWA
LIPGHEEMKIPVNRADLSMYEELLERVDRTFDANAYRFVDLALFLAPLGIS
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atgctcgatgccgacttcgactcccatatgaagcagtcgcgcgccgcccggaggaagaag
aagaccgcagtccagcgcgctatcggcgacatgttgtttgacacgcctgctgaaccggcc
ccacatcccattctgcaagcggactctcctcgggacgactatgctgctccgcccccgtcg
ctcaccaagcctgccgtagagcctgtcatacaggtagagcccaacccggtccagacggct
tacctcgaggactcactcgacgctgacatgctcgtcgctgctgccgacgcggccgtcaaa
cagcgcatggccgccccgaagccccccgttgcgcctaaacgcgtgccagccgccactttc
gcagagaggtctgcggctcgcattgcgtcggctgttgcgcccgctcctgttgcgccgaac
gccccgctcgcgcggggaccagacggcgaggtcatcatgttctggacggatgcccatgag
atgcgtgtcaacggcggccagcacctgtacatgtttgggaaggtacctgtcgggaccctg
gacagtggcgtctacgcgagcgtctgcgtccaagtgcagggtatggaacggaagctgtat
gtgctcccgaggatgcacaaagtggatgcgcgcggtcgacctacgaaggagccggtcaag
attgtcccggatgtgcatgcagagattagcgccatattgctcgggaagagctcaggcgat
ggcaaagggtttgcagcgaggcggtctggatccaatctgccgtccactatcatggcgaaa
aaggtcatgcgatcatgtccgttcggcgatacgcacgctccgcgagaagctacagagtat
ctcaaagtcaagattccattttcaaatacgagcaacttgttccctgagtcgtctgggaag
acatttagccgcgtgtatggaacgaagacgtccgcttcggaggacctatgcatgaaaaga
agactgcgaggccctggttgggttcgtctcaccaacgccactccaatgcagtccaaggta
tcgcatgccaagtgctcgttgactataccttcgccgatggacgtgactgttgccaacgac
atgtcagacaaggatccgcctccagtttcagcgctgtgccttaatgccaagacaacgctc
aacccgaagactggagctcatgaaatagtcatgctcgctggcgtatttgtaaggggagtc
ccgcttagtggccctctgccggaaaacgctcttgagcctgacggcccgaccggaactcgg
gactttattcttgtacgggctcctgacggccagagtgttccatttggcttttcggaccgg
gcaagatcagtgttggcgcgcggtggtggagtggaagtcgccccgaacgaatcagtctta
ttgaacagtttcttgtcaaagctactccgcctagacccggatgtccttttgggtcatgac
ctcatgggctttggtttagacgttttaattgcccgcatgaatgtcaggcggtcaagagaa
tggagtcgccttggccgtcttgtgcaacgccgtgacctcagccatgttgtcaaaaacaac
agcagttcgtcgtggttcaagtccgaggccgtcgcgggaaggcttgtggtggacacttac
tcgtacgcaaaggagcttctcactcgagagaaggactactcattgtcagcgctgtctcgg
aatgtcctgggtgggcacttattgggcgggacatccgggcatcttccccctaccactgac
gtttccaaggttccggcggctttcgactctacagactctctttgcaaccttgttttcgag
tgctctctggaagcccgaacagctggccggttggctgcacatctgtctgttcttccactc
agtcgccagctcacatgcatcagtggaaacctttggtcgcacacactgcgaggagcacgc
gccgagaggatcgaatatttattgtgccatgaattcaagctcatcggggcgaagaataca
ggaacatccggaaaggccggggacatagggtcgaaactgctcctcccagacaagctcact
aaagccgaaagagtaaggcttggcaagcagttcgaagaagagcagaatgccaatgctcct
aggccaccgccaggtggagcagaggctgaaattgacggcgccgagggtgcaaccccaaag
gcgagtgcgaagtcggcaaagagcaaaagtgctcgacggaagccccaatactccggaggt
cttgtgctcgagccgaaaaaagggttctatgaccgctacacactgcagctggatttcaac
tctctgtatccttccattatccaagagttcaacatctgttttacgactctagacttggca
aaacacaaggagaagtcggcatccgaattagaagcgccctttgcgcaaggatccccggac
gaaggggtgagtggtgctgatgggtcggcaatgatgaacctcccaaacaaaagtctcttg
gagggtgtgcttcctcgagttctacggcggctcgtagagcaacgacgccaagtgaagaag
cttttgaaggaagaacgcctcaaagctggaaaggaaacgcttcgagctcagcagcttgat
attcggcagttggcgataaagttgacagccaactcactctatggatgccttggtttcgag
ggcagtcgatttttcgctcgcccactggcagaaatggttacatgccaaggtcgtgacact
ctgcagaaaactgtcgacctcgctcgggattctttcaacgctcaagtcatctacggtgac
acagattctcttttcgtatatacaggccttgatgacatcaaccgagtgaggaagctagga
acagagctgaagcgagaagtcaacaagaagtatcgcactttggagattgaaatcgatgct
atctacaagaaaatgctgcttttgaagaagaaaaagtacgcagccctaaaagttgtcgat
cccaacaacccggacaaggtcgtgcgagaagtcaagggtttggacttggtccgacacgat
tggtgcgatctttcccacgacgcctcggaacacttcctgcagcagatattccaaattcag
gcagccgacatcgatgacgcagttgggaatatcgttaccttccttggtgagctcgccaag
agggtgaacaacaacgaaatatctctctccaaatatgtcatcacgagatgtttgacgaag
cgccctcaggactacccggaaggtggagggttgccacatgtcactgtagcaattcgcttg
atcaatgagcacaagaagcgcatcaagccgggggactatatcaaatatgtcgtttgtctt
aatgccgctgatggcgagcagtcatcgagtgggagcaagtcagttgcgcaacgagcttat
catccggacgaagtcatcgcatccgagggcaagctcgttatcgacctgaagtactatctt
gagaaccaggttcttcctcccattatgcgactatgtgaccccatcgagagtatcgaggcc
agccgtattgcagtctctcttggcctggacgggcggcgttatgagcgaaagacctatgac
atggacagtgggaattaccttgcccttggtccacaatcagctgctgagaagttccaggat
gttgacccgctaatggcatgttgcgtaaactgcggtgcgcagagtgagttccagggcgtt
ttgttcaagtcctccgggaaggcgatccagacagcgggcttggactgctgcaagtgcaac
cggcgattctcctcagcgacgctcgccaacatcataacccttgctctacgcacttggacc
agcaagtactacacttccgcactacaactgaacggggacgacggtagtcgtaagcgcgaa
acgcgcaacatcgcacttggcggcaacggggccctggctagacgcaagttcgatgaagcg
tggttgtacaagcagctgcgatatttgcggttccttgtggacgtccccggtcggtgggct
cttataccggggcatgaggagatgaaaatccctgtgaatcgagcagacttatcgatgtac
gaggaattgctggaacgagtagatagaacgttcgatgcgaacgcgtaccggtttgtcgac
ctggctttgttccttgcgccgttgggcatctcctga
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