Chondrus crispus (carragheen): CHC_T00010060001
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Entry
CHC_T00010060001 CDS
T02916
Name
(RefSeq) Putative ATP-dependent RNA helicase, Uap56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03013
Nucleocytoplasmic transport
ccp03015
mRNA surveillance pathway
ccp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CHC_T00010060001
09122 Translation
03013 Nucleocytoplasmic transport
CHC_T00010060001
03015 mRNA surveillance pathway
CHC_T00010060001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccp03019
]
CHC_T00010060001
03041 Spliceosome [BR:
ccp03041
]
CHC_T00010060001
Enzymes [BR:
ccp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHC_T00010060001
Messenger RNA biogenesis [BR:
ccp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CHC_T00010060001
Spliceosome [BR:
ccp03041
]
Complex C
Other components
EJC/TREX
CHC_T00010060001
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CHC_T00010060001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DUF7086
DUF7272
Phage-A118_gp45
Motif
Other DBs
NCBI-GeneID:
17318195
NCBI-ProteinID:
XP_005710441
UniProt:
R7QNS0
LinkDB
All DBs
AA seq
430 aa
AA seq
DB search
MSADHPKPEELGEEDLVDYEEEDEAPTEKPTENGKDTTKKGTYVGIHSAGFKDFLLKPEL
LRAIQDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFTLAVLQQIEPIDGDVSC
VILGHTRELAYQIAHEFERFAKYLPNIRSAVIYGGVPVRQHKDLLSSNPPHIIVGTPGRI
KDLINQKILNISKVKFFVLDECDKVLEELDMRRDVQQIFKETPHEKQVMMFTATLSKEMR
VVSKKFMQSPMEVFVDDETKLTLHGLLQYFVKLQENGKNRKMTDILDALEFNQVVIFVKS
VPRAIELNKLLIECNFPSIDIHSGIRQEERIKRYKAFKDFQKRILVATDIFGRGIDIERV
NIVINYDMPSSPDSYLHRVGRAGRFGTKGLAISFVSSEPDSEVLQGVQSRFEVAISELPN
EVDQASYMTA
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgtccgctgaccaccccaagcccgaggagctcggcgaggaagatctcgttgactacgaa
gaggaggacgaggcgcccaccgaaaaacccaccgagaacggcaaggacaccacaaagaaa
ggtacatacgtcggtatccactctgccggcttcaaagactttctgctcaagcccgaactg
ctccgcgcgattcaagactgcggtttcgagcatccgtccgaagttcaacatgaatgcatc
ccccaggccatcctcggaatggatgtcctgtgccaagccaagtctggaatgggaaaaacc
gccgtctttacccttgctgttttgcagcagatcgagcccatcgacggtgacgtcagttgc
gtcattctaggtcacactagggagctggcctatcagatcgctcacgagttcgagcgtttt
gcaaagtatctcccaaacattcgctccgccgtcatctatggtggagtccccgtccgccag
cacaaagaccttctctcaagcaacccgccccatattatagtcggaacccccggtcgtatc
aaagatctaatcaaccagaagattctcaatattagcaaggtcaagttctttgtccttgat
gagtgtgacaaagtcctcgaggagctcgacatgcgtcgcgatgtccagcaaattttcaag
gagacgccccacgagaagcaagttatgatgtttacggctacgctgtccaaggaaatgcgc
gtagtttccaaaaagttcatgcagagcccgatggaagtctttgttgatgatgagaccaag
ctcacccttcatggtctccttcaatactttgtcaagctccaggagaatgggaagaaccgc
aaaatgactgatattttggatgctctcgaattcaaccaggtcgtcattttcgtcaagagt
gtcccgcgtgccatagagttgaacaagctgctcattgagtgcaacttcccgtctattgat
attcactctggcattcgacaggaggaacggatcaagaggtacaaggcgttcaaggatttc
cagaagcgtattctggtggcgaccgacattttcggaaggggaatcgatatcgagagggtc
aacattgtgattaattatgacatgccatcaagccccgacagctacctgcatcgcgtgggt
cgtgccggtcgttttggaaccaagggccttgcgatctcttttgtcagctcggagccggac
tcagaagtgttgcagggtgtgcagtcgcgctttgaggttgcgatttcggagctgcccaac
gaggtggatcaggcttcttatatgactgcataa
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