Chondrus crispus (carragheen): CHC_T00010082001
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Entry
CHC_T00010082001 CDS
T02916
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CHC_T00010082001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccp03019
]
CHC_T00010082001
03041 Spliceosome [BR:
ccp03041
]
CHC_T00010082001
Messenger RNA biogenesis [BR:
ccp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
CHC_T00010082001
Spliceosome [BR:
ccp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CHC_T00010082001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
17326732
NCBI-ProteinID:
XP_005719015
UniProt:
R7QLX8
LinkDB
All DBs
AA seq
578 aa
AA seq
DB search
MTPFGSTADSQAALATVHDSLSKVREALRDCISLQPPPVPSAPIRRPSQKILAYTVMAKV
AHDAIIRKVDSARRNSQADIAMLQKLRQRSACLGYERMLLERQIDAQRAVKAPTVDKVSV
KLPHPAPQNASEEESMDVHIDTIKALCAELQKRQRVRDEVDGLVKRTKRKRDQLVTMKDD
LRSLPRAVATLRNAIEPVRKLLKVGEELAASPPELAQIRLLPVPLYVLTREAFAFRTMFP
KILNISLLEEQAKLEGVYRPHPRLVRMDIQAGEHIGAGVCLQVFFRFHPELHVVTVTSRI
ANSEQPSAKMDGKLLQLLFPYDVGETSPNPCNSHLENGAFSFDVSKAGGARPFVWANLLC
GLPCLERFDTVNEIVGAGWPTEAAGHEAHIRFKETVLSLQNRLCMEVALRKQLEALQAKR
MPIQAGDLGFMVEPEARLEMFAKCKSRDEESKNGLGGDNVNVMFREVWEMRVWSGELTMG
CDVGIASNYPTGTPCFRLKLEKEQRDISEADMLRLEQKVNMYKMEGDLEDKRELLLSGQI
LTLLEGVDKLQGERSSSGKARVKRGTEKVPPSLARLLT
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgacgcccttcggctcaacggctgactcgcaagccgcgctggccactgtgcatgactcg
ctgtccaaagtgcgcgaagcgctgcgcgactgcatctcgcttcagccgccgcccgtgccc
tccgcgcccatcaggcggccgtctcaaaaaatcctcgcatacaccgtgatggccaaggtc
gcgcacgacgccatcatccgcaaggtcgactcagcgcggcgcaactcgcaggccgacatc
gctatgctacaaaagctccgccagcgctccgcttgcctcggctacgagcgcatgctcctg
gagaggcagatcgacgcgcagcgagccgtcaaggccccgacggtggacaaagtatccgtc
aaattgccgcacccggccccgcagaatgcctcggaagaggagtccatggacgtgcatatc
gacaccatcaaagccctctgcgccgagcttcagaagaggcagcgtgtccgcgatgaggtc
gacggcctggtcaagcggacgaagaggaagagggatcaactcgtaactatgaaggacgac
cttcgctctctgcccagggccgtagcgacgttgaggaatgcgattgagccggtgcgcaag
ctgctcaaagtcggcgaggagcttgcggctagcccgccagagctggcacagatcaggtta
ttgccagtcccgttgtatgtgcttacacgggaggcattcgccttccgcaccatgtttcca
aaaatcttgaacatctcccttttggaggagcaggccaaacttgagggggtttaccgccct
catccacggcttgtgcgcatggatatacaggcgggcgagcatataggtgcgggtgtgtgc
ttgcaagtgtttttcaggtttcatccagagttgcacgtggttactgtgacatcgcggata
gcaaatagcgagcaaccgtctgccaagatggacggaaagcttttgcaattgctcttccct
tatgatgttggcgagacgtcgccaaacccgtgcaactcacacctggagaacggggcgttt
tcatttgatgtatcaaaggctggaggggcaagaccatttgtatgggcaaacctactatgt
ggtcttccgtgcttggagcggtttgatacggtgaacgagatagtaggggctgggtggcct
actgaagcagccggccatgaggcgcatattcggttcaaggagacggtactttcgcttcag
aatcgtttatgcatggaagtggctctgcgaaagcagttggaggctcttcaagcaaaacga
atgcccattcaggcaggggatttggggtttatggtggaaccagaggcacgtttggaaatg
tttgcaaagtgtaagtcaagggatgaagagagcaagaacggcctggggggggataatgtg
aatgtgatgtttagagaggtatgggagatgcgagtgtggagcggagagctgacgatgggc
tgtgatgtgggtattgcatccaactatccaacggggaccccgtgtttcaggttaaaactt
gaaaaagagcagagggatatcagtgaggcagatatgctaagactggagcagaaagtcaac
atgtataagatggaaggtgacctggaggataagagagagttgttgctaagtggtcaaatt
ttgacattgttggagggtgtggataagctgcagggagaacgaagtagttctgggaaggct
cgagtgaaacgcgggacggagaaagtaccaccgagtctagctcggttactcacgtga
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