Chondrus crispus (carragheen): CHC_T00010095001
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Entry
CHC_T00010095001 CDS
T02916
Name
(RefSeq) Sm-like protein, LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03018
RNA degradation
ccp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CHC_T00010095001
09123 Folding, sorting and degradation
03018 RNA degradation
CHC_T00010095001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccp03019
]
CHC_T00010095001
03041 Spliceosome [BR:
ccp03041
]
CHC_T00010095001
Messenger RNA biogenesis [BR:
ccp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CHC_T00010095001
mRNA degradation factors
5'-3' decay
Lsm complex
CHC_T00010095001
Spliceosome [BR:
ccp03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CHC_T00010095001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
17317648
NCBI-ProteinID:
XP_005709944
UniProt:
R7QQI6
LinkDB
All DBs
AA seq
234 aa
AA seq
DB search
MGSACAGCRGLCRWRGMVGNPEDEMPETGVGLGFLNGGETAILLYGDEKRSDYHRASQSD
YFHIFLSTTNPILERWLTTSPRRSAFLSTSTRSPTSFRVFRAESISPLCSLAQQRKRRAK
LSHSHDMSSGDKPQRKSQTPKVILDLSKHADKEVQVRLSGGRQVHGILKGWDQLLNVVLD
EAVEDLRDPTDPYRLSGKERKIGLLVARGTSVMTISPVDGVTQIENPFVQDGAQ
NT seq
705 nt
NT seq
+upstream
nt +downstream
nt
atggggagcgcgtgtgcaggttgtcgtggactttgcaggtggaggggaatggtgggaaac
cctgaggatgagatgcctgagacgggcgtggggttgggattccttaatggtggtgaaact
gcaatactgttgtatggcgacgagaagagatctgattatcacagagcaagtcagagcgat
tattttcacatatttttgtccacaacaaaccctatccttgagaggtggttgaccacctca
cctcggagatcagccttcctctcaacaagcactcgaagccccacctcatttcgcgtcttt
cgagctgagagtatctctccgttgtgtagccttgcgcagcagagaaaacggcgagcgaag
ctctctcactcacacgacatgagcagcggcgataagccacagcgcaagtcgcaaacgcca
aaggtgattctcgacctttcgaaacacgccgacaaggaggttcaagtccggctatctggc
ggccgtcaggtccacggtatattgaaaggatgggaccagttgctcaacgtcgtccttgac
gaagcagtcgaagatctcagagatcctacggacccgtatcgactcagtggcaaagaaagg
aagattggcctattggtagcacgcggcacttctgtaatgactatctctcccgtggacggc
gtcacgcagattgaaaatccatttgtgcaagatggcgctcagtga
DBGET
integrated database retrieval system
