Chondrus crispus (carragheen): CHC_T00010115001
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Entry
CHC_T00010115001 CDS
T02916
Name
(RefSeq) superkiller viralicidic activity 2-like W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHC_T00010115001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccp03019
]
CHC_T00010115001
Enzymes [BR:
ccp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CHC_T00010115001
Messenger RNA biogenesis [BR:
ccp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
CHC_T00010115001
mRNA degradation factors
3'-5' decay
Ski complex
CHC_T00010115001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
Helicase_C
ResIII
DEXQc_Suv3
MTR4_beta-barrel
Motif
Other DBs
NCBI-GeneID:
17321739
NCBI-ProteinID:
XP_005714021
UniProt:
R7Q6M9
LinkDB
All DBs
AA seq
1252 aa
AA seq
DB search
MFTPASAPSHAIELESDSIVGRSSPLADLQYVAQPISEGHGTVRRPLAHAVPFVLSQREV
VAGLARDGATVLRPIEKEGRERKKGKAHSDAALAKEVQEMVRAMLGEGTKPVQDGSLPEE
TTASEAAHSLNIHSLGENEHAISHGAEAAEDVRGGAGDERIGLDAFLSPADISLKQNVFN
LSTVFDPRSLNDVELFGVSEEESEAEEEVDNGAVSRKLAALTANQQSMEDVNEELDNLLG
LRYEPGRVAAGRTKRPRSGTRNAVDDNPWAAEDKLDVSDFAQLVPDMAIEYPFNLDVFQR
RAVFRLERDENVFVAAHTSAGKTVVAEYAIALARQRNTKVVYTSPIKTLSNQKFRDFTQR
FGDVGIITGDISINPEASCLVMTTEILRSMLYKGADLVRDLSHVIFDECHWLNDPERGVV
WEEAIILLPQHVNIVMLSATVPNAMEFAKWVGRTRQKPIYVIHTRKRPVPLSHQLFVKGD
VYPLFDSSEGRFLDANFRRGVNHHKEKTKNSNIRFGGGRNHAWMQIIKYLQKRDLDPAIF
FCFSKRKCDEAAEQLHTQDLTAGATDKTQIHLFYQSAIARLSPTDRNVPQIARHREMLKR
GVGVHHAGVLPIIKEITEVLFQQGLIRVLFATETFAMGVNMPARTVVFTAIHKYDNQGHR
LLEPGEYIQMAGRAGRRGLDDVGTVLLFPTTADFPVQSDVKTVLTGVPKPLRSQFRLTYN
MILNLLRIDELRVEDVMARSFSEAPAGRASGTVKKLLVKGNERLNQMQTMSVGVERYRSL
YEVSTRINVLCQRISVTLTSNAKNSTTAAFGVGRVVLVRASDETLRLGVIIKAPFSGRAK
GGLSLKKPSLGLRTGFQPGKRDSGKIQIKVLVLCGGPAARREDCPLFQHNIDVVDLKNKS
TQFNAGGLIVQIQDLDYTGIVGLSSLKIEVDEKGLVPIRGDPDPVALSSTAEALRTIASD
EANWNALPQLHPVTDLGLQSLDIVEQWDERKRCVWILNEMVTDLLKGGAMFDLEKEFKFL
SQASKLQEKLELLKIATSDESLHLMPDYKQRIEVLGKLGYIDGTSVRLKGRAACEVNTCD
SLILTELVFEKVLQKLSAVDLAAILCSLVFQGKVGGNETSYTQIDSVREQSEELYQGCQS
MLGVLASLGSAQSDSGLAVSPYEFARSSANFGFTIGVRGWASGKTFAEICSVIEGEVPEG
TIVRTIVRLCELLRETKNVGRVIGDPDLQAKAEEAMQLVRRDVIFAASLYVQ
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atgttcacccccgcctcggctccctcgcacgccatcgagctcgagagcgactccatagtc
ggccgcagctcgccacttgccgacctccaatacgtcgcgcagccaatatctgaggggcat
ggcaccgtccgccgccccctagcacacgccgtccccttcgtgctctcccagcgcgaagtc
gtcgccggcttagcgcgcgacggcgccaccgtgctacgccctattgaaaaggaggggagg
gagaggaaaaagggaaaagcgcacagcgatgccgcgctcgcgaaggaggtgcaagagatg
gtgcgtgccatgctcggagagggtacgaagcctgtccaggacggatccctgccggaagag
acgactgcttcggaagccgctcattcgcttaatatacattcgcttggtgagaatgagcac
gccatatcgcatggagccgaagccgcggaggacgtgcggggaggggccggggatgaacgc
attgggctagatgcctttctgtctccggcggatatatcgctcaagcagaatgttttcaac
ctatctactgtattcgatccgcggagcttgaacgacgtcgagcttttcggcgtttcagag
gaagagagcgaagccgaagaagaggtggacaacggcgctgtgtcgcgtaagctcgccgca
ctaacggctaaccagcaaagcatggaggacgtcaacgaggagctcgacaaccttctcggc
ctccgctacgagccggggcgcgttgccgctgggcgcaccaagaggccccgctcgggaact
agaaacgcggtcgacgataacccctgggccgccgaggacaagctcgacgtgtctgacttt
gcgcagctcgttccggatatggccatcgagtacccgttcaatttggatgtgttccagcgc
cgtgccgtgtttcgcttagagcgcgacgagaacgtcttcgttgccgcgcatacatccgcg
gggaagactgtcgttgcggaatacgccattgcgctcgcgaggcagcgcaacacaaaggtc
gtgtacacgtcgcccattaaaacgctcagcaaccagaagtttcgcgattttactcaacgc
ttcggcgatgtgggcatcatcacgggtgatatcagcatcaacccggaggcgtcgtgtctt
gtgatgacgacggagattttgaggagcatgttgtacaagggcgcagaccttgttcgcgat
ttgagccatgtcattttcgatgagtgtcactggctcaacgacccggagcgaggggtcgtg
tgggaggaggccattattttgctcccgcaacatgtgaatatcgtcatgctttctgcaaca
gtgccaaacgctatggagttcgccaaatgggtcggccgcacgagacaaaaacccatatac
gtgattcacactcggaagagaccggttccactgtctcatcagctgttcgtcaagggggat
gtatacccattatttgattcatcagaaggaagatttctggacgcaaacttcagaagggga
gtgaatcaccacaaggagaaaacgaaaaactccaacatccgattcggtgggggccgaaat
cacgcgtggatgcagatcatcaagtatttgcagaagcgagatctggacccggcgatattc
ttttgtttcagtaagcgcaagtgcgacgaggcggccgaacagcttcacactcaagacctc
acggctggggcaactgacaagactcaaattcatctcttttaccaatccgcgattgccagg
ctttctccaactgaccgcaacgtcccgcagattgcgcgacatcgggagatgctaaaacgg
ggtgtcggggttcatcatgccggagtgcttccgatcatcaaggaaataactgaagttctt
ttccaacaaggtctcattcgggtgctgtttgcgacagagacgtttgccatgggtgtcaac
atgcctgcacgaactgtcgtcttcacagccatccacaagtacgacaatcaaggccatcgc
cttctcgaacctggcgagtacatccagatggcgggacgggccggtcgtcgaggattggac
gacgtcggcactgtgttgctattccctacgacagctgactttcccgtccagagcgatgtc
aagaccgtcttaacgggggtccccaagccgctgcgctcccaatttcgacttacctacaac
atgattctcaacttgctccgcatcgatgagcttcgtgttgaggatgtgatggcacgcagt
ttcagcgaggcaccggcagggcgcgcatctggaacggtgaaaaagctgctcgtgaaagga
aatgaacggttgaatcagatgcagacgatgtcggtgggggttgagagatacaggtctctc
tacgaagtatccaccagaatcaatgtgttgtgtcagcgcatcagcgtaactcttacctcc
aacgcaaaaaattcaacgacggcagcctttggggtgggacgtgtagtattggtacgcgca
agcgacgaaacattacggctcggggtgattatcaaggcaccatttagtggacgcgcaaag
ggcggtctttctttgaagaaaccatctctgggcttgagaacagggtttcaacccggcaaa
cgggactcgggaaagatccaaatcaaagttttagttttgtgcggaggaccggctgcaaga
agagaggattgccccttgtttcagcacaatatcgacgtcgttgatttgaagaacaagtct
acgcagttcaacgctggtggattgattgttcaaatccaggatcttgactatactggcatt
gtagggctctcgtctttgaagattgaagtcgatgagaaggggctggtaccgattcggggg
gacccggatccagttgctctgtcgtctacagcagaagctctgcgcacgattgcgtcagac
gaagcaaattggaatgcgctgccacagttgcatccagtgactgatcttgggctgcagagc
ttggatatcgtcgagcaatgggacgagcgcaagcgatgcgtttggattctgaatgagatg
gttactgatttgctgaagggtggggcaatgtttgatttggaaaaggaattcaagtttctt
tcacaagcgtccaagctgcaagaaaaacttgagctcttgaagattgcgacgtcagatgaa
tctttacacttaatgcctgactacaagcagcgaatcgaagttctaggcaaactaggatac
atcgacgggacgagcgttcgactgaaaggacgggccgcttgcgaggtgaacacatgcgac
agcctgattctaacagaactggtgtttgaaaaagtactccaaaagctgagcgcggtagac
ctcgcggctatcctatgcagcctagtattccaaggaaaagtgggcgggaatgagacgagc
tacacgcaaatcgacagcgtgagagagcagagcgaggagttgtatcaaggatgtcaatcg
atgctaggggtgctagcaagcctcgggagtgcgcagtcagacagcgggctggcggtctct
ccctacgaatttgcgcgaagcagcgccaatttcggttttacaatcggggtgcgaggatgg
gcaagtggcaagacgtttgccgagatttgttctgtgatcgaaggtgaagtaccagaaggg
acgattgtgcgaacgattgtgcggctctgcgaactgctgagggaaacgaaaaatgtggga
agggttattggagaccccgatctgcaggccaaggccgaagaggcgatgcaactggtgcga
cgggatgtgattttcgcagcgagtttgtacgtacagtag
DBGET
integrated database retrieval system
