Chondrus crispus (carragheen): CHC_T00010156001
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Entry
CHC_T00010156001 CDS
T02916
Name
(RefSeq) Putative splicing factor 3B, subunit 3, SF3B3
KO
K12830
splicing factor 3B subunit 3
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CHC_T00010156001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccp03021
]
CHC_T00010156001
03041 Spliceosome [BR:
ccp03041
]
CHC_T00010156001
03036 Chromosome and associated proteins [BR:
ccp03036
]
CHC_T00010156001
Transcription machinery [BR:
ccp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
CHC_T00010156001
Spliceosome [BR:
ccp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
CHC_T00010156001
Complex B
CHC_T00010156001
Complex C
U2 SnRNP specific factors
CHC_T00010156001
Chromosome and associated proteins [BR:
ccp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
CHC_T00010156001
TFTC complex
CHC_T00010156001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
17320601
NCBI-ProteinID:
XP_005712884
UniProt:
R7Q6T1
LinkDB
All DBs
AA seq
1289 aa
AA seq
DB search
MKQGRKFPENRKVQQGGSNPFRRATFFILSSSSPSAVLTRIVSLLPPSLPPFPSRSPVAR
PAPQPPRLFTMHLYHFTALCSSTPVHLANGSFTLPRQQELVLARAGSLHLYRLHPKTSYL
QPLFQTPVFCQIRSLSTFRLPGTRRDYLLLTTDAGAVTILSASAMAFRRVHCEPFGKSGA
RRTVPAEYAVCEPHGRAAMLAALEKGKLAYVLNRDPDENLTISSPLEAHKSALITHALTS
LDVGFDNPVFAALERTYDATSYKVLAYYELDLGLNQVVRKRTARVAAGSNLLLTVPGGTD
GPGGVLVCSPGIVAYRNLLDEDDEGRLIALMEDPPDGAQPENECKEPLVVAGTAYHDRKR
NAFFFLLSTELGDLIKAELAWEPDRGATKLSLFYFDTLPGPALGMCIFRSGYLAAAIEGS
DALLLRFKEVNVPEDNPAGGFSSSTGATLAGKLQFRPSALLCRLTVAEVIDSFGPILGMC
KLDGGGVGQSSSLVCTTGKARGGCVRVIRRGMGVLEMSQPNELRAKVTEVFSCKENAESL
YHRLIVVSFAKKTKVLEVGDAKLEETVNSGFELNERTLAAGQIGTNSFVQVTRSGVRFVR
GGDAKSASEWIPPVPAVVLAGCCNQQQVVVVLSTGAIVNFEVDSKIDWAGSEADEIGAPV
IAIPDVPPGRKRSKFFAAGDGVSVKVRIFQILEDGSIEALGLHLAPAPVESIALIDFACI
DKEAIISSPFLALVIGTIHGALVRLTVDALTGTLSSKQSHFLGEKPVRVKHVKISGVPTC
LLMGSSTWLLFLRGGRATMSPLSTDPMDRAAAFALEQSPDGFAVTYGSRLRLLSLESVSA
LITSACLPHGLSSTPRKVVRIPRIRKNVSLNAIDDCLPDSSMLDEIVEPRLHSLNGEDDP
DLEGTNPYSSVRPSAFETLDTVKMDEADCILTVASFLDFGGDTTGTNRYLVVSVASNMQV
SGTAPKLPKRPRSPLDERSSKREETFVLRVYQVDAATERLTFVHKTVVPEAVYCLTAFRD
MLLVGIGATLRLYDLGKQQLLRKGEYKLAVRNKISALAISGGDRIFVGDVSDSVTLFKYE
PSEPIAANHTRGAAIGRRGGHFVPLAADTVPRWIVTLEVLDYNTVSAGDKFGNIFVLRVP
TELGILNGGLSITSASPVDRGRAAINIAPHKLVVEASYHVGSMTGSLVRGSLALQTTKLE
KNAGDEALIYSTLSGTIGILAPLRTQHDIDFARALEREMRTRGKHVVDGDLCQAFTGLSP
TGREECATALGRSVEDIDKKLEELQSSYV
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaggggcgaaaatttccggaaaatagaaaagtccaacaaggaggatcaaaccca
ttccgtcgagcaacattcttcatcctctcttcctcttctccttccgctgtcttgacccgc
atcgtctccctccttcccccttcccttccccccttcccttcccgctctcccgtcgcacgc
ccggctcctcagccaccccgcctcttcaccatgcatctctaccacttcacggcgctctgt
tcctctacccctgtacacctggcaaacggttccttcacgctcccgcggcagcaagagctc
gtccttgcgcgcgccggctcgctccatctgtaccggctgcacccgaaaacctcctacctg
cagccgctcttccaaacgcccgtcttctgccaaatccgctccctgtctaccttccgtctc
cccggcacgcgccgcgactatctcctgctcaccacggatgcgggcgccgtcaccatcctg
tccgcctcggccatggccttccgccgcgtccattgcgagccgttcggcaagagcggcgcg
cgccgcaccgtccccgcagagtacgctgtatgcgagccccacggccgcgccgccatgctc
gccgccctcgagaagggcaagctcgcctacgtcctcaaccgcgaccccgacgaaaacctc
accatctcctccccgctcgaggcacacaagtccgccctcatcacccacgctttgactagc
ctcgatgtcggattcgataacccagtcttcgcagccctggagcgcacatacgatgccact
agctacaaggtcctcgcgtactacgagcttgatctcggtttgaatcaggtcgtcaggaaa
aggaccgcccgcgtcgcagcggggagtaatttgctccttactgttcccggaggcactgat
ggaccgggaggggtcttggtatgtagccctggcattgtggcgtacaggaacttgcttgat
gaagatgacgaggggaggttgatcgccctcatggaggatcccccagatggcgcacaacct
gaaaacgagtgcaaggagcccttagtcgtcgcaggaaccgcctaccatgaccgcaaacga
aacgccttcttcttcctgctcagcacggaacttggcgaccttattaaagccgagctcgca
tgggagccggatcgcggcgccaccaagctttccttgttttactttgacaccctccctggg
ccggccttgggcatgtgcatttttcgatcaggctacctggccgccgcaatcgaggggagc
gatgcgctgctgctacgctttaaagaggtgaatgtacctgaagataatccggcgggcgga
ttttcgagttcgactggggcaactttggctgggaagctgcagtttcggccctcggctttg
ctttgtcgtctcaccgttgcggaagtcatagattctttcggcccaatactgggtatgtgc
aagctggacggcggcggtgtcggacagtcgtcaagtttagtttgtacaactggaaaggca
cgaggtggttgcgtaagggttatccgacgcggcatgggggtactggagatgtcgcaaccc
aacgagctccgagcaaaggtaacggaggtgttctcttgcaaggaaaatgcggagagttta
tatcatcgcctcatcgttgtgtcatttgcaaagaagacaaaagtcctagaagttggagac
gcaaagcttgaggagacggtaaactctggattcgagctgaacgagcgcacccttgccgca
ggtcaaataggtacgaatagctttgttcaggtcacaagatccggggttcgcttcgtaagg
ggtggggatgcgaaatctgcaagcgaatggatcccaccagtaccggctgttgtgttagct
ggatgttgcaaccagcagcaggttgtggttgttctgtcgactggtgctattgttaatttt
gaggtcgattccaaaatagactgggctggcagcgaggcagatgaaattggggcgcctgtg
atcgccattccagacgttcctccggggcggaagcggtcaaagtttttcgcggcgggagac
ggagtcagcgtaaaagtccgtatctttcaaatactcgaggatggttctatcgaagctctc
ggattacacctcgcccctgctcctgttgaaagcattgcattaatcgactttgcatgcatt
gacaaagaagcgataatttcatcgccttttctcgcgcttgttatcggtacaatccacggc
gcccttgtgcgtttgactgtcgacgcgctgactggtacattgtcaagcaagcagagccac
tttttgggagagaagccagttcgagtcaagcatgtcaagatttccggcgttccgacctgt
ctcttgatgggcagttcgacttggctactctttctccgcggtggacgggcgacaatgtcg
ccgctgtcgactgatcccatggatcgtgccgctgccttcgcgctggagcagtcaccagac
gggtttgccgttacgtacggatcaagactacggctgctatccttagaaagtgtgagtgcc
ctgattacatctgcttgcctcccgcatggcctctcgtcaacgccaagaaaagttgttcgt
ataccacgaatcagaaagaatgtctccttaaatgccattgatgactgtttacccgatagc
tcgatgttagatgaaattgttgagccaaggctacattccttgaatggggaagacgatcct
gaccttgagggtaccaacccatattcaagtgtccgcccttcagcttttgaaacgttagac
actgtgaagatggacgaagccgattgtattttgacggtggcgtcgtttttagattttggt
ggcgacacgacaggtactaaccgatacttggtcgtaagcgtagcctcaaacatgcaggta
tctggcacggcccccaaactgccaaaaaggccgcggtctccgttggatgagagaagctcg
aagcgtgaggagacctttgtactccgtgtataccaggtggatgctgccaccgaacgcttg
actttcgtgcacaagaccgtggtacccgaagcagtctattgtctaactgccttccgagac
atgcttcttgtcgggatcggggcaactcttcgtctctacgacctcggcaagcaacagctt
ctacggaagggcgagtataaattggcagtccgcaacaaaatttcggccctcgcaatctcg
ggaggagaccgaatttttgtaggagatgtgagcgactctgtaactcttttcaaatacgag
ccctcagagcctatcgccgcgaaccatactcgaggcgctgcgatcgggaggcgaggtggg
cactttgtgccactcgcagcagacaccgtgccgcgttggatcgtgacgctggaggtgcta
gattacaacacagtgtcagcaggtgacaagtttggcaacatctttgttctccgcgttcca
actgaactcggaatcctcaacggcggcttgtcgatcacgagtgcatcgccagtcgatcgg
gggcgggcggcgataaacatcgcgccgcacaagctcgtagtggaagctagctaccacgtc
gggtcgatgaccggcagtctcgtccggggctccttggcgttgcaaacaacgaaactagag
aagaatgctggggacgaggctctcatctactcgacactctcggggaccatcgggatcctg
gcaccactgcgcacacagcatgacatcgacttcgcgcgcgccttggaaagggagatgagg
acaaggggcaaacatgtggtggatggagacttgtgccaagcgttcaccgggctttcgccg
accggtcgggaggaatgcgctacagcactggggcgatcagttgaggacatcgataagaag
ttggaggaattgcaatcatcatacgtatga
DBGET
integrated database retrieval system
