KEGG   Chondrus crispus (carragheen): CHC_T00010162001
Entry
CHC_T00010162001  CDS       T02916                                 
Name
(RefSeq) Splicing factor 3A subunit 1, SF3-A
  KO
K12825  splicing factor 3A subunit 1
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CHC_T00010162001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ccp03041]
    CHC_T00010162001
Spliceosome [BR:ccp03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    CHC_T00010162001
 Complex B
    CHC_T00010162001
 Complex C
   U2 SnRNP specific factors
    CHC_T00010162001
SSDB
Motif
Pfam: Surp PRP21_like_P ubiquitin
Other DBs
NCBI-GeneID: 17324040
NCBI-ProteinID: XP_005716324
UniProt: R7QGI3
LinkDB
AA seq 676 aa
MASTVEPDERVGIIVPPPEVKGILETTATYVGKKPALEARVLQKHNQDPRFSFLKVSDPY
YAYYCSKVAEARAAATGQPAPVQSISSEAEKGKEIITEGQPLSSKDQIHAKDGQVPSASQ
ATADDEPVRGSKDAADEKMTTSATAKVSFLKSIRAKEEAARQEPREPPPEDLFTLISMAP
QPHALGLEVMKLAAQFVAKNGREFLTALRSKESRNSLFDFLRPMHPHFIVFQRLVDAYRA
IMTEGNASNFLPKGHNVRECEKAIMQDVWYMHDWECLRAEREHDAAMDESEKVKAAQIDW
YDFVVLETVDIDDDETNLPAPVADAKQLPKILAATRKLELEREKNRGDVDMDIDTDETPN
GSVLSQTTEKHGMVVTVEADTALSWDRIRKEPTAIPVKQVNDVRVGSIADEPTVVLPSGQ
RVPLSQAEASMRAELLNPSYKDERARAAAKNRKQNLARGEEMARHLARWEQQRTEGGVYN
RGDLQEALATQPKSSAAEADVRLKKAERLGPKLPGMEIEELSPPAKRRRVEAAKEALEKA
AKKKAAETAAAEEEAAVAEAAGIATEEKLPGLMTADEWLQKQGQHAQVRIKMPSHSNKEW
KLQGQEMELKAPLKKMVSNLKKVIEKWTKLPAKKQKLHMEGAGFLKDKMTLAFYNVSNET
TITLEVKERGGRKRNH
NT seq 2031 nt   +upstreamnt  +downstreamnt
atggcgagtactgtcgaaccggatgaacgcgttggaatcattgtcccccctcccgaagta
aaggggattctggaaacgacggcaacctacgtaggtaagaaacctgcgttagaggctcgc
gtcttgcagaagcataaccaagacccacggttctcatttctcaaagtctctgatccctac
tacgcctactactgcagcaaggtcgccgaagctcgtgcagccgcgactggacaaccagca
cctgttcagagtatttcaagtgaggctgagaaaggaaaggaaataatcacagaagggcaa
cccctatcatcgaaggatcaaattcacgcgaaggatggacaggtgccgtctgcttcgcag
gccacggcggacgacgaaccggttagagggagcaaggacgccgctgatgaaaagatgacg
acaagcgcaactgcaaaagtttcgtttctgaaatcaatacgagctaaagaagaagcagca
cgtcaagagccgcgcgaaccaccaccagaagacctctttaccctgataagcatggcacct
caaccccatgctctgggtctcgaagtcatgaaacttgctgcacaatttgttgcgaagaat
gggcgagaatttcttaccgcgctgaggtcaaaagagtcccgaaacagcttattcgatttc
ttgagacccatgcacccccacttcattgtgtttcagcgcctcgtcgacgcatatagagct
attatgactgagggcaatgcttcaaattttttaccaaaaggccataacgtacgcgaatgt
gaaaaggccataatgcaggacgtctggtatatgcatgattgggaatgtctacgtgccgag
cgcgaacacgacgctgccatggatgagtccgaaaaggttaaggctgctcaaattgattgg
tatgactttgttgttttagagacggtggatatcgacgatgacgagaccaacctaccagca
cctgtggcagatgctaaacaactccccaaaattcttgctgctaccaggaagctagaacta
gaaagagaaaagaaccgaggcgatgtagatatggatatcgatactgatgaaacgcctaac
gggagtgttctttctcagacaacagagaagcacgggatggttgtaacggttgaggccgac
acggctctctcttgggatcgcattcgcaaggagccgactgctattcctgtcaaacaagtg
aatgacgtgagggttggaagcatcgctgacgaaccgactgttgttttgccatcagggcaa
cgcgttccattgtcgcaggcagaagcatcaatgcgagcggaactactcaatccttcatac
aaagacgagcgagcgcgggcagcggcaaagaatagaaagcaaaatttggcaagaggggag
gagatggctagacatttagctcgatgggagcaacaacggacagagggtggtgtctacaat
cggggagatctacaggaagcgctggcaacacagccaaagtcgtcagcagccgaagctgat
gtaagactaaagaaagcggaacgactagggcctaagctgcctgggatggagattgaagag
ctttctccgccggcgaaaagacggcgtgtagaggcagccaaggaggcgctggaaaaggca
gccaaaaagaaggcagccgaaactgcagccgcagaggaggaagcagcagtggcggaggca
gcaggcatcgctacagaggaaaagctacctggtttgatgacagcggatgaatggcttcag
aagcaagggcagcatgcgcaagtgcgaataaaaatgcctagtcactccaacaaggaatgg
aaactgcaaggtcaggaaatggagctcaaggcaccattgaagaaaatggtgagtaatttg
aagaaggtgattgagaaatggacaaagctacccgcgaagaagcagaagcttcacatggaa
ggtgccggatttctcaaagataagatgacactcgcgttctacaacgttagtaacgaaacg
acgatcactttagaagtgaaagaacgagggggaagaaagcgaaaccattga

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