Chondrus crispus (carragheen): CHC_T00010166001
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Entry
CHC_T00010166001 CDS
T02916
Name
(RefSeq) KH domain-containing protein
KO
K13210
far upstream element-binding protein
Organism
ccp
Chondrus crispus (carragheen)
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccp03019
]
CHC_T00010166001
03041 Spliceosome [BR:
ccp03041
]
CHC_T00010166001
Messenger RNA biogenesis [BR:
ccp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
CHC_T00010166001
Spliceosome [BR:
ccp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
CHC_T00010166001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KH_1
KH_KhpA-B
KH_2
KH-I_KHDC4-BBP
KH_Vigilin
Motif
Other DBs
NCBI-GeneID:
17322072
NCBI-ProteinID:
XP_005714357
UniProt:
R7Q9V2
LinkDB
All DBs
AA seq
566 aa
AA seq
DB search
MPYPQPPPMPMMGTVIPLVPPQISPHQQRHHQQHHHHHHLQHPHLLNQPTTYQLWVPQER
VGAVIGGQGTVIRSLQERSGATIQVHNDTVRGDRKLFTIFGTLAQYDIAKQLISDIVEKP
RQSHGSSHAGPHSTSDRSPYSQSGDHGPRSGDVWKTVYVPTSCVGLVIGRNGETIRNLQD
RSGADIKVTPDEEAQPGADTRSILLSGTDEAISTAHQLVSEIVMDAKSRRPPHSGPQVGF
ALNGQSLVFEVLSIPNEKVGLIIGKKGATIRDLQMRSGAKIQVTKDESSVQSDGTRPVTL
TGMRANVDEAKAMIASKINMPMSQSSTANPVYNNSPPQPGPSSTSPGGPSQPGPGYMVPN
LYEPAFQNGQQPFQQGYDANDANAQSRAMAYFQYVGYNNYMAQQRQFQSHMPMHFPIPQQ
QQLEQQAPSANSSQDQQEASGQPSQYSPTPLQQGQQLESIQGSPGIAQRDASGNIVMYPA
QQYQQLSPHMAGHQMYSTGPPNRMFSRREQVQAAQVRAQMVMHAQAHAHAQAQAQAHAQA
QAEAQGESEARLQTHEPLVPTPEDDG
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgccatatccgcagccaccgcccatgcccatgatgggaaccgtcatacccttggtccct
ccccagatctctccccatcagcagcgtcatcatcagcagcaccatcatcaccatcacctc
caacatccccacctcctcaaccagcccaccacctaccagctctgggtccctcaagagcgc
gttggcgccgttattggcggacaggggactgttattcgtagcctgcaagagcgttccggt
gccactatccaggttcacaatgacactgttcgtggagatcgcaaactctttacaattttt
ggtaccctggcccagtacgacattgcaaagcagcttatcagtgacattgttgaaaaaccg
cgacaatctcatggcagcagccacgcgggcccgcattcaacgtctgaccgatctccgtat
tcacaatcgggtgatcacgggcctaggtcgggtgacgtgtggaaaactgtctatgttccc
acaagctgtgtcggcctagtaattggccgaaacggagagaccatacgaaatttgcaggat
cgatccggtgctgatatcaaagtcacaccagacgaagaagcccaacctggagcagacacc
cgttctatattgttatcggggacagacgaagcgatttccacagcacatcaactcgtctcc
gaaatcgttatggacgctaaatcacgccggccgccccacagtggacctcaagtggggttc
gctctcaacgggcagtcactagttttcgaggttttgtccatcccgaatgaaaaggttggg
ctcatcataggtaagaagggggcgaccattcgcgatttgcagatgagatcgggcgccaaa
attcaagtcacgaaagacgagagctctgtccaaagcgatggtactcgtcctgtaaccctc
acagggatgcgcgcaaacgtcgacgaagctaaggcaatgattgcgagcaaaatcaatatg
cccatgtcacagtcctcaacagcaaacccagtgtacaacaacagcccgccgcaacccggt
cctagctcgacgtcccctggcggtccaagtcaacccggtcccgggtacatggtaccaaac
ttgtacgaacctgctttccagaatggtcaacaaccatttcagcaaggttacgatgcgaat
gatgccaatgcacaaagtagagcgatggcgtactttcaatacgtcggatacaacaattac
atggcacagcagcggcagtttcaatcgcatatgccaatgcattttcccattcctcaacaa
cagcagctggaacaacaggcaccatcggctaactcctcacaagaccaacaagaggcctcg
gggcaaccctcgcagtactcacctaccccattacaacagggacagcaacttgaaagtatt
caaggttcccctggtattgctcagcgagatgctagtggcaacatcgtgatgtacccagca
cagcagtatcaacaattgtcaccacatatggctgggcatcaaatgtactcgactggtcca
ccaaaccgcatgttttcccgacgtgagcaagttcaagcggcacaagtgcgcgcccagatg
gtgatgcatgcccaagcacatgctcatgcacaagcgcaggctcaagctcacgcacaggca
caagctgaagctcagggagagtctgaagcacggctccaaacacatgaacctttagtacca
actcctgaagatgacggatag
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