Chondrus crispus (carragheen): CHC_T00010177001
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Entry
CHC_T00010177001 CDS
T02916
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4, putative, WD40-repeat-containing protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CHC_T00010177001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccp03041
]
CHC_T00010177001
Spliceosome [BR:
ccp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
CHC_T00010177001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_EML
PRP4
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_SCAP
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_SPT8
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_NOL10_N
Beta-prop_DCAF4
Beta-prop_IFT140_1st
VPS8_N
eIF2A
Motif
Other DBs
NCBI-GeneID:
17318295
NCBI-ProteinID:
XP_005710593
UniProt:
R7QQA0
LinkDB
All DBs
AA seq
458 aa
AA seq
DB search
MPPEAMEILPNRALAAAREAREAKLAKFEAERVARAVLVPTSDATVRENLRARGMPVCLF
GEDGHDRRERLRGALAHEKLTGQERVPTGGGEVVAEVEELRREEYLTEGGAELRKVRAEL
VEMSVRKAGERLARERGGVGRRAAREREERAVRCVRRMEVVASQVGGERPLSAICLFEAG
GQRRVVTGGWGGGVRVWEGEGRCEEVQRLALHEGRVSAVCVPREWSDVLLTAAADGCAAV
SARGEEGKFAERARLKGHRGRVGDVKMHPGRKGLVVSGGFDGEVRVWDDGREVMRQESGH
EAVYRVGFHPDGGLMGSGGLEGGIRMWDLRSGRAVMTMGKAHAGGVLGLEFCADGQRVVT
GGGDNVVRVWDLRAGKCEKTVAAHRGLVSAVRCGGDVVFSGSFDRSVKCWGVKRGWSLIA
AVTGFEEKVTGVDCSAGGEVLVAACYDKTWKMWSGVED
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgccgcccgaagccatggagatactccccaatcgcgcgctagctgccgcgcgagaagcg
cgcgaagcgaagttggcgaagttcgaggcagagcgggtagcgcgggcagtgctagtgccg
acgtcggacgcgaccgtgcgcgaaaacctacgcgcgcgtggcatgcccgtgtgcctgttc
ggggaggacgggcacgaccgtcgtgagcgtctgcgcggcgcgctggcgcacgagaagctg
acggggcaggagcgtgtgcccacgggtggcggggaggtggttgcggaggtggaggagttg
cggcgcgaggagtacctgacggaggggggcgcggagctgcggaaggtgcgcgcggagctc
gtggagatgagcgtgcggaaggcgggggagcggttggcgcgggagcgcggcggcgtgggg
cggcgcgcggcgcgggagcgggaggagcgggccgtgcggtgcgtgcgtcgcatggaggtc
gtggcgagccaggtgggcggcgagcggccgctgtcggccatctgcctgtttgaggcgggc
ggccagcgccgcgtggtgacaggcgggtggggcggcggcgtgcgcgtgtgggagggggaa
gggcgctgcgaggaggtgcagcggctggccctgcacgaggggcgcgtgtcggccgtgtgt
gtgccgcgtgagtggagcgacgtgttgctgacagcggctgcggacgggtgcgcggcggtg
agcgcgcggggggaggaggggaagttcgcggagagggcgaggctgaaagggcatcgtggg
agggtgggggatgtcaagatgcaccccggaaggaaggggctcgtggtgagcggcgggttt
gatggggaagtgcgtgtgtgggatgatgggcgcgaggttatgcggcaggagagcgggcac
gaggccgtgtaccgggtggggtttcacccggacggcgggctgatggggagtggcgggctg
gagggcgggattcggatgtgggacctgaggagcgggcgggcggtcatgacgatgggcaag
gcgcacgcggggggcgtgctcgggcttgagttttgcgcggatgggcagcgcgtggtgacg
ggtggtggggataatgttgtgagggtgtgggacttgcgggctggtaagtgcgaaaagact
gtggccgcgcaccgcgggttggtgagcgctgtaaggtgcggcggggatgtggtgttcagt
gggagctttgataggtcggttaagtgctggggcgtgaagagggggtggagcttgatcgcg
gccgtgacagggttcgaggaaaaggttaccggggtggactgctccgcgggcggcgaggtg
ctggtggcggcgtgctacgacaagacgtggaagatgtggagcggggtggaggactga
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