KEGG   Chondrus crispus (carragheen): CHC_T00010180001
Entry
CHC_T00010180001  CDS       T02916                                 
Name
(RefSeq) WD40 repeat-containing protein
  KO
K14298  mRNA export factor
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    CHC_T00010180001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccp03019]
    CHC_T00010180001
   03036 Chromosome and associated proteins [BR:ccp03036]
    CHC_T00010180001
Messenger RNA biogenesis [BR:ccp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     CHC_T00010180001
Chromosome and associated proteins [BR:ccp03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    CHC_T00010180001
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_EML_2 WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st WDR55 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_1st EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_RIG_2nd WD40_Gbeta Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd Beta-prop_Aladin Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_RIC1_2nd Hira
Other DBs
NCBI-GeneID: 17322669
NCBI-ProteinID: XP_005714963
UniProt: R7QAP6
LinkDB
AA seq 353 aa
MVFSAGGSAQPHNPNGDVLLTDPPSDTVQSLSFSPPTLAPKSFLVSASWDSEVRCWEVQS
NGSSTPIGMIKHSAPVLDVAWSADGRSVFSAGAEKVAKMWMLSGNQTTTVAAHDAPIRHV
FYCNDLGNGSPALVTGSWDKTIKYWDIRAPTGTAMGTVQLSSKVYAMDVRAPLLVVGTAD
RKLRVYDIRKPQEVYHEKIAQLKHQFRCLATFPDQAGYAVGSIEGRVSIDHVQDKDRKLD
FAFKCHRDADSNVIYPVNSIAFHEQHGTFATAGGDGGFNFWDKDNKHRLKQFQRVNQPIT
AGAFSSDGNIYAYAVGYDWSKGAQHHNPATNRKYILLHGVQQAEVRGKKTQKK
NT seq 1062 nt   +upstreamnt  +downstreamnt
atggtcttctccgccggcggctccgcgcagccgcacaacccgaacggcgacgtgcttctc
acggacccgccgtcggacacggtacagtcgctctccttttccccgcccacgctcgcgccc
aagagcttcctggtgtcggcgtcatgggactcggaggtccggtgctgggaggtgcagtcc
aacggctcgtccacgcccataggcatgatcaagcactcagcccccgtgctggacgtcgcg
tggagcgcggacgggcgctccgtcttctccgccggcgcggagaaggtcgcgaagatgtgg
atgctctccggaaaccagaccaccaccgtcgccgcccacgacgcacccattcgacacgtc
ttttattgcaacgacttgggcaacggctccccggcactcgtcacgggatcctgggacaag
accatcaagtattgggatatccgcgcccccaccggcaccgccatgggtaccgtccagctc
tcatcaaaagtctatgccatggacgtccgcgccccgctcttggtcgttggtaccgccgat
cgtaagctcagggtttacgatatccgcaagccgcaagaagtctatcatgagaagatagcc
cagctgaagcatcagtttcgatgtctcgctacattcccagatcaggccggttacgcagtc
ggctctatcgaagggagggttagtattgatcatgttcaggataaggataggaagttggac
tttgccttcaagtgtcacagagatgctgatagcaacgtcatctatcccgtcaattccatc
gcttttcatgagcagcacggcacgtttgcaactgcgggcggcgatggcggcttcaacttt
tgggataaggataacaaacataggttgaagcagtttcagagggttaatcagcccatcacc
gcaggcgctttcagctcagatggcaatatttatgcttatgccgtgggttatgactggagc
aagggcgcccagcatcacaatccggctactaatcgaaagtacattttgctgcatggcgtg
caacaggcagaggtgcgggggaagaagacgcaaaagaagtga

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