Chondrus crispus (carragheen): CHC_T00010189001
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Entry
CHC_T00010189001 CDS
T02916
Name
(RefSeq) superkiller viralicidic activity 2-like 2, putative
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHC_T00010189001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccp03019
]
CHC_T00010189001
03041 Spliceosome [BR:
ccp03041
]
CHC_T00010189001
03009 Ribosome biogenesis [BR:
ccp03009
]
CHC_T00010189001
03016 Transfer RNA biogenesis [BR:
ccp03016
]
CHC_T00010189001
Enzymes [BR:
ccp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CHC_T00010189001
Messenger RNA biogenesis [BR:
ccp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CHC_T00010189001
Spliceosome [BR:
ccp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CHC_T00010189001
Complex C
U4/U6.U5 tri-SnRNP related factors
CHC_T00010189001
Ribosome biogenesis [BR:
ccp03009
]
Eukaryotic type
Pre-60S particles
Helicases
CHC_T00010189001
Transfer RNA biogenesis [BR:
ccp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CHC_T00010189001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
17319649
NCBI-ProteinID:
XP_005711933
UniProt:
R7Q2Z4
LinkDB
All DBs
AA seq
1052 aa
AA seq
DB search
MGSKRPREVDTAPAVEDLTLDGPPEKKPRELERHLRESSQRSMPHSFGIRVSSAASGNAP
GAEGAATKLGESPIMLKTYCQHDVSLPAGYPEPYDFDKMAQPADHKPAKEYAFTLDAFQR
ESVKCIERNESVLVAAHTSAGKTVVAEYAIATALREKQRVIYTSPIKALSNQKFRELEHE
FSDVGLMTGDVTINKNASCLVMTTEILRSMLYRGSEVVREVSWVIFDEVHYMRDQERGVV
WEETIILVPQNVRFVFLSATIPNAREFSEWIAHLKNQPCHTIYTDTRPVPLQHYLFPSGG
EALHLIVDDKGNFKMDAFEKAMTEMGSNKNDKLGSGGGGALVKKKKNRRDSGVPGKSDCF
KVVKMIMDRDYHPVIVFSFSRRDCEAMAMQMAQLECNNEEEQELVSKVFENAVSSLNVED
QSLPQITAILPLLKKGVGIHHSGLLPIIKEVVEILFQEGLLKCLFATETFSMGLNMPART
VVFSQYRKFDGSQFRPILGGEYVQMSGRAGRRGIDAKGIAILMCDEKIEPTMAKNIMSGS
AEPLKSTFRLGYNMLLNLLRAEEADPEYVIARSLAQFQADRALPANEKKLQELEMEKASM
VVGGQGFGVEEHEVKTYFKLREVVEKLRKEIRDLIHKPSHIVPFLQPGRLTRVRDEKLDI
DYGWGAIIQFTRKGSASRKKPEDERYSIDVLLRCEAGSNKGKRPRPYKLPAKSKSENGSI
SKDKRKANAPPKEEWIVVNSTFRDLDGLSALRVYKPADLRSEASRAAVGASVVEVLRRFP
DGPPMLDPFGDLGISDEGLPVLLRKAEAVEEALIASPVAKCPRLEVVMSQWRKKQGINDK
VKAVKRELEIARGIILKEELKRMKRVLRRLNFTDNDSIVQVKGRVACEVNSADELVITEL
LLGGNLNHMAPEVLVSLCSCFILDEGKKDENLKLEKDLETAYQTVKTVATRVATVTKESN
ILIDIETYVESFSPNAMNVVYFWCKGQSFSEVCKLSDLFEGSVVRCFRRLEELLRQLVAA
VKGIGNTELEQKFEAGSAALKRGIAFHASLYT
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgggatccaagcgtccgcgtgaggtagacacagctccggcagtcgaggaccttactttg
gatgggccaccagagaagaaaccgagggaactagagaggcacctgcgtgaatcttcccag
cgaagtatgcctcactcattcggaattcgcgtatcatcagcggcaagcggcaatgctcca
ggagcagaaggagcagctacgaaattgggagaatctcccataatgcttaagacttattgc
cagcatgatgtttctctgccagcaggctatccagaaccatacgattttgataagatggct
caaccggctgaccataagcccgcgaaggaatatgcattcacgctcgacgcttttcagaga
gagagcgtcaaatgcattgagcgaaatgaaagcgtacttgtagcggcccataccagtgct
ggaaagactgttgtcgcagaatatgcaatcgccacggcattacgcgagaagcaacgtgtt
atttacacatccccgatcaaggcgttgagtaaccaaaagtttcgagaacttgagcatgag
ttcagcgatgttggcctcatgacaggagatgtaactatcaacaaaaacgcttcatgtctc
gtcatgactactgaaattttgcgcagtatgctctaccggggctcggaagttgtgcgcgag
gtgtcatgggttatttttgatgaagttcattacatgagagaccaggaaagaggagttgtt
tgggaggaaacaatcattctcgtcccacagaatgtccgttttgtctttcttagcgcgacg
attccgaatgccagggaattttctgaatggattgcgcatctcaagaatcaaccgtgccat
acgatctacaccgacacgcgaccagtgcctctgcagcattatctcttcccgtctggcggt
gaggccttacacctaatagtcgatgacaaaggcaacttcaaaatggatgcatttgagaaa
gcaatgaccgagatggggtcgaacaagaatgacaagctcggtagcggcggcggtggggct
cttgtgaaaaaaaagaagaatcgtcgagactctggcgttcctggcaaatcggattgcttc
aaagttgtgaagatgatcatggatcgcgactatcatccagtgatagttttctcgttttca
cgacgagactgtgaagcaatggccatgcaaatggctcagcttgaatgcaacaacgaagaa
gaacaggagcttgttagcaaggtcttcgagaatgctgtttcatctctaaatgtcgaggat
caaagcctccctcagattacggcgattcttccactgctgaagaagggagttggcatacat
cattctggactgctgccaatcattaaagaggtggtagaaatcttgttccaagagggcctg
ttaaaatgcttgtttgcaactgagacgttttcaatggggctcaacatgcccgctcgtact
gtggtgttctctcagtatcgaaagttcgatgggtcacaatttaggccaatccttggagga
gagtacgtgcaaatgagtgggcgtgctggtcgaagaggaatagatgccaaagggattgcg
attcttatgtgtgacgagaagattgagccaacaatggccaagaatatcatgagcggatct
gcggaaccattgaaatctacttttcggcttggttacaacatgcttctcaatctcttgcga
gcagaagaagccgatccggagtacgtcatagcaagatcattagctcaatttcaggcggac
agagcgctcccagcgaatgagaagaagcttcaagagcttgagatggaaaaggctagcatg
gtcgttggtggacagggatttggggtcgaagaacacgaagtcaaaacctattttaagctg
cgggaggttgtggagaagttgcgaaaagagattcgagacctcatccacaaaccatcgcat
atcgtaccgttcctgcaacctgggcgactgacacgggtgcgtgacgagaaattagacatt
gactacggatggggtgctatcattcaattcactcgcaaagggtcagcatcccggaaaaag
ccagaagacgaacgatatagtattgacgtcctgttgcggtgtgaagccggatctaacaaa
ggaaagcgacctcgtccgtataagttgcctgccaagagtaagagcgaaaatgggagcata
tctaaagacaaacggaaggccaatgctccaccaaaagaggaatggattgttgtgaactcc
acgtttagagatctggacggtctatctgcattacgggtatacaaacccgcagatctacga
tcagaagcaagtagggcagcggtgggggcgtcagttgttgaggttttgcgacgcttcccg
gacggaccaccaatgctagaccctttcggtgatctaggtatttcggacgaaggccttcca
gttttgctgcgaaaggctgaagctgtggaagaagcgctgattgcttcaccagtagccaag
tgtcctcgtcttgaagtagtcatgtctcagtggcgcaagaagcaaggtatcaatgacaag
gtgaaggccgtgaaaagagagcttgaaatcgcaagaggcatcatactgaaagaagaattg
aagcgcatgaaaagagtattacgcaggctcaattttacggacaacgacagtatcgttcaa
gtcaagggccgtgttgcctgtgaggtcaattctgcagacgaacttgtgatcacggaactg
ctgctgggaggtaaccttaatcatatggctcccgaagttctcgtttctctgtgctcctgc
ttcatccttgatgaaggaaaaaaggatgaaaatttgaagctcgaaaaggaccttgaaact
gcgtaccaaacggtaaaaactgttgccacgagagtggcaactgtgacaaaagaaagcaac
attttaatcgatattgagacttacgtcgagtcattcagccccaatgcgatgaatgtggtt
tacttctggtgcaaaggacagagcttctccgaggtttgcaagttatctgacttgtttgag
ggaagcgtggttcgttgcttccgaagactagaggaactgcttcgccaactggttgcagca
gtgaaaggaattggtaatacagagctcgagcaaaagttcgaggctggttctgctgctttg
aagcgaggaattgcattccatgcatctctgtatacttga
DBGET
integrated database retrieval system
