Chondrus crispus (carragheen): CHC_T00010225001
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Entry
CHC_T00010225001 CDS
T02916
Name
(RefSeq) hnRNP-like protein, RNA recognition motif (RRM)-containing protein
KO
K14411
RNA-binding protein Musashi
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CHC_T00010225001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccp03019
]
CHC_T00010225001
Messenger RNA biogenesis [BR:
ccp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
CHC_T00010225001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
OB_RNB
DUF4259
RRM_PARP14_1
Motif
Other DBs
NCBI-GeneID:
17321722
NCBI-ProteinID:
XP_005714006
UniProt:
R7Q6L6
LinkDB
All DBs
AA seq
382 aa
AA seq
DB search
ETEEDSVRSYFARYGPVSDCVIMRDRLTGHPRGFGFVTYDDQLVAERVATEFHELDGRQV
EAKIAVPRSECVPALRTNAWRATKKVFVGGLPATCREAELLAHFKRFGDVAECQVMYDHQ
TGNSRGFGFVTFTSEATVDTVVDLDQHEILAKHVEVKRAEPKQALEARRGREAAAAAAVA
AAHQQQHQHHHQQQQQQHHPAAVAKHHTQSVTAHAPYAAVAATNSAASVPAIPSPPSASH
STPAAQSPFPGFGPWSSLFSSAPGASSGSSWSALVAAERASLNAAPGPSLPVSSPNSNAT
STSVPAGGSSLRSPSNSGMGFFTPAQPYTPDLAQCVYNAYYGSSTTPEGFEIGAHAQGLP
SARAERRFHPYPTRERVDRSYR
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
gagacagaggaggattctgtgcgttcctactttgcccgctacggccctgtctccgactgc
gtcatcatgcgcgaccgtctcacgggccatccgcgcggcttcggctttgtcacgtacgac
gaccagctggtcgcggagcgcgtggccaccgagttccacgagctggacggccgccaagtc
gaggccaagatcgccgtcccgcgctcggagtgcgtcccggcccttcgcaccaacgcctgg
cgcgccaccaagaaggtcttcgtcggcggcctgccggccacctgccgtgaggccgagctg
ctcgcacacttcaagcgcttcggcgacgttgccgaatgccaggtcatgtacgatcaccag
actggcaactcacgcggcttcggcttcgttaccttcaccagcgaggccaccgtcgatacc
gtcgtcgatctcgatcagcatgagatcctggcaaagcacgtcgaggtcaaacgcgcggag
cccaagcaagctctggaagcccgccgcggacgcgaggccgccgccgccgctgccgtcgct
gcggcccaccaacagcaacatcagcaccaccatcagcagcaacaacaacaacaccacccc
gccgccgtcgcaaagcaccacactcaatccgtcaccgctcacgccccgtacgcagccgtt
gccgcaaccaattccgccgcctccgtccccgccatcccgtcacccccgtccgcctcgcat
tccactcccgctgcgcaaagccccttcccgggcttcggcccctggtcaagcctcttctca
tcggctcccggcgcatcatcaggctcgtcgtggagcgccctcgttgccgcggagcgcgcc
agcctcaacgctgcacccggtccgtcactccctgtgagcagccccaatagtaacgctacg
tccacgtcggtgcccgcggggggctcatcactgcgctccccatcgaacagcggcatgggc
tttttcaccccggcccaaccgtacaccccggaccttgcgcaatgtgtttacaacgcgtat
tacgggtcgtcgacaacgccggagggttttgagatcggcgcacatgcacagggcttgcca
agcgcaagagcagagcggagatttcacccgtatccgaccagggaacgcgtagacagaagt
tatcgttag
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