Chondrus crispus (carragheen): CHC_T00010228001
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Entry
CHC_T00010228001 CDS
T02916
Name
(RefSeq) chromatin-remodelling complex ATPase ISWI2
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
CHC_T00010228001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccp03021
]
CHC_T00010228001
03036 Chromosome and associated proteins [BR:
ccp03036
]
CHC_T00010228001
Transcription machinery [BR:
ccp03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
CHC_T00010228001
Chromosome and associated proteins [BR:
ccp03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
CHC_T00010228001
RSF complex
CHC_T00010228001
WICH complex
CHC_T00010228001
B-WICH complex
CHC_T00010228001
NORC complex
CHC_T00010228001
BRF complex
CHC_T00010228001
NuRF complex (fruit fly)
CHC_T00010228001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
Helicase_C
ResIII
Myb_DNA-binding
DEAD
HDA2-3
SWI2_SNF2
KIP1
Motif
Other DBs
NCBI-GeneID:
17323564
NCBI-ProteinID:
XP_005715854
UniProt:
R7QF22
LinkDB
All DBs
AA seq
1033 aa
AA seq
DB search
MPVSNGDAPSRPSSKARVPATLAQSNAVIHTEIRRAQGDRRNFLLAQAPMFKHFIGEDDD
SDTAAKPSAKQPEKRLGVKSKKRRMTEKEEDRLMMESAAKSDMSDPLVQTTRLKKQPSNV
TGTMRPYQIEGLNFLIGLFERGLNGILADEMGLGKTLQTISLLGFLRQYKGLTGPHLIIV
PKSTLGNWMNEIKRWCPDIRAVRFHGTQEERKHQMSNLIVYGKFDAVVTSYEVVTKEKAH
LTKFCWRYLIIDEAHRIKNENSLLSQVVRMFTTQARLLITGTPLQNNLHELWALLNFLLP
DVFSSSDVFEKWFSSVEAVEGDNTTNDTEKQQEIIGQLHAVLRPFLIRRLKSEVEHSLPP
KKETVLFTKLSAMQLELYRNLLKKDIDAINGKGGDRVRLLNILMQLRKCANHPYLFDGVE
DRSLDAFGDHLIQNCAKMTLLDKLLPRLKEGGHRVLIFSQMTRVLDILEDYCTMRQFKFC
RIDGSTDGEWRDEQIADYNRDGSEKFIFLLSTRAGGLGINLATADTVVLYDSDWNAQCDL
QAMDRAHRIGQRRPVNVYRLITENSVEERILRTAMSKLRLDTLVIQQGRLTQQKKNLQKD
ELLNMIRFGADKFFKSNASDYAEEDIEVILSRGAEKTKEMNEELGEKITTSGNLDMLDFK
LSGDDANKDKSIFHFEGVNYKEKAAGGNEFFLDVGKRVRSKNYDEAAYYRDAMRQTPAPQ
VEKKKPRLKYRKEPSLPDHMLYNTPRLRELFQVEREIVDKFNAEADAVVKEGKEQPELPK
LESLLSEEHENERETLLDEGYSEWTKREFSSFLRGIERYGRENFDKILDDIGDSKTMEQL
VEYSAAFWEKGPTRIDTWPKVLKVIEDGEQKIARREEMERAIQVKVKRYDDPWKELDMVY
SNNRSKTFIDEEDRWLICMTSQLGYGRWDDIKLEVRKAWQFRFNWWLKSRTPNELKRRVD
VLIRLIEKENEEIAEQQKLMEKRKKNASRRRDSVSNGRLNGPSFPQKKRKTEQSQVDSFF
SSKPKSQKISRPS
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtctccaatggcgacgcgccttcgcgcccctcgtcgaaagcccgcgtcccggct
accctggcccagtccaatgcagtgattcacaccgagatccgtcgtgcccagggcgaccgt
cgcaattttttactcgcgcaggcacccatgttcaaacatttcatcggtgaagacgacgac
tccgatactgccgcaaagccttctgccaagcagccggagaagcgtttgggtgtcaagtcg
aagaagaggcgcatgactgagaaggaggaggataggctcatgatggagagcgcagcgaag
agcgatatgtctgacccgcttgtgcaaacaacacgcctcaagaaacagccgtcaaatgtg
acgggtactatgaggccatatcagattgaggggctcaacttcttaattggattgtttgag
cgtggcctcaatggcattcttgcggatgagatggggctcggtaagaccttacagactatc
tctctgctgggttttctcaggcagtacaagggactcactggacctcaccttatcattgtt
ccgaaaagcacgctcgggaactggatgaatgaaattaagagatggtgtccggatattcgc
gccgtccggtttcatggcactcaggaggagcgcaagcatcaaatgtcgaacctcattgtg
tacggcaagtttgatgcagttgttacatcgtatgaagtcgtaacaaaggaaaaggctcac
cttaccaagttttgctggcgctacctcatcattgatgaggcccatcgcatcaagaacgaa
aattcactcctttcccaggttgtccgtatgtttacaacacaagcacgcttgctcatcacc
ggaactccattgcaaaacaaccttcatgagctctgggccctgctcaacttcctcttgcct
gatgtcttttcgagctcggacgtttttgagaaatggttttcgagtgttgaagctgtagaa
ggcgacaacacgacaaacgatacagaaaagcaacaggagattatcggtcagttgcatgct
gtcttgcgtccgttccttatccgtcgtttgaagagcgaagttgagcacagtctgcccccg
aaaaaagagaccgtgctgttcacaaaactctccgcaatgcagcttgagctatacagaaac
cttctcaagaaggatattgatgccatcaatgggaagggtggagaccgcgtgcgcttgctc
aatattcttatgcagttgcgcaagtgcgcaaatcatccgtatctcttcgatggcgttgaa
gatcgttcgctagatgcttttggtgaccatctcattcaaaactgcgcgaagatgaccttg
ctggacaaactcttgcctcgtctgaaggagggcggacatcgggtcctcatattttcgcaa
atgacacgcgttcttgacattctcgaagactactgcacgatgcggcaattcaaattttgc
aggatcgatgggagtaccgacggtgagtggcgtgacgagcagattgccgactacaatcgt
gatggttccgaaaaattcatcttcttattgtcgacgagagctggtggcctcggtatcaat
cttgcgaccgcagataccgttgttctgtacgacagtgattggaacgcccagtgtgatttg
caagccatggatcgcgctcatagaattggtcagcgtagacccgtgaatgtctaccgcctg
attacagagaactcagtcgaagaacgcattctgcgcactgctatgtccaagctacgccta
gacactcttgtgattcaacaaggtcgactaacacaacagaagaaaaacctccaaaaggac
gagcttctcaacatgatccggtttggcgcggataaatttttcaagtctaatgcatcagac
tacgctgaggaagatattgaagtgatcctctctcgcggtgcagaaaagacaaaggagatg
aatgaagagctaggagagaagatcacaacatcgggcaatctcgatatgctcgacttcaag
ctctccggcgacgatgctaacaaggacaagtctatctttcattttgaaggtgttaactat
aaggagaaggccgccggcggaaacgagttctttttggacgttggtaagcgagttcggtct
aagaattatgacgaagccgcctactacagggacgctatgcgacagacgccagcgcctcaa
gttgaaaagaagaaacctcgactgaaatatcgcaaagagccatcattgccagaccacatg
ctgtataatactccaagattgcgagagctcttccaagttgagagggaaatcgtggataag
ttcaatgccgaagccgacgccgtagttaaggaaggcaaggaacaaccagagctcccaaaa
ttagaaagtttgctatctgaagagcacgaaaatgagcgtgaaacgcttctcgatgagggt
tacagcgagtggacaaagagagagttttctagtttcttgcgtggaatagagcgttacggg
cgtgaaaattttgacaagattctcgatgatataggcgattcaaagactatggagcagctg
gtagaatattcagcagccttttgggaaaagggcccgactcgtattgacacatggccaaag
gttctgaaggttattgaagatggagaacaaaagattgctcgtcgagaggagatggaaagg
gcaattcaagtcaaggttaaacgatacgacgacccatggaaggagcttgatatggtctat
tccaacaatcgttccaagactttcatagacgaggaggaccggtggttaatatgtatgacc
agccagctcggctatggaagatgggatgatatcaagctggaggtgcggaaggcatggcag
ttccgtttcaattggtggctcaagagtagaacaccaaacgaattgaaacgtagagtggac
gtcttaattagactcatcgagaaggagaatgaagagatcgccgaacagcaaaaactgatg
gaaaagcgcaagaaaaatgcgtccagacgcagggattctgtgtcaaatggcagattaaat
ggtccatcatttccccagaagaagagaaagaccgagcaatcgcaggtcgattcattcttc
tcatcgaaacctaagtcacagaagatctctcgaccttcatag
DBGET
integrated database retrieval system
