Chondrus crispus (carragheen): CHC_T00010233001
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Entry
CHC_T00010233001 CDS
T02916
Name
(RefSeq) ATP-dependent RNA helicase HAS1, putative
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
ccp
Chondrus crispus (carragheen)
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccp03041
]
CHC_T00010233001
03009 Ribosome biogenesis [BR:
ccp03009
]
CHC_T00010233001
Enzymes [BR:
ccp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHC_T00010233001
Spliceosome [BR:
ccp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
CHC_T00010233001
Ribosome biogenesis [BR:
ccp03009
]
Eukaryotic type
90S particles
Helicases
CHC_T00010233001
Pre-60S particles
CHC_T00010233001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Cas3-like_C_2
CzcB_C
Motif
Other DBs
NCBI-GeneID:
17325440
NCBI-ProteinID:
XP_005717722
UniProt:
R7QK49
LinkDB
All DBs
AA seq
627 aa
AA seq
DB search
MPSQKQVKPDSGKTRKRKRKSINKDRQPEDDVPAATAAVDMTENIPNVAHQLPEKDAAGS
KRRKKAVKSADAPGEESKNIDDDHSQAEEDRVQAKPQPKKQSKMQVDEVKEDDIATDGVL
TKRRFDELNLSEKTIHALKDMTFERMTEVQARCIPHGMAGRDVLGAARTGSGKTLAFVIP
VIELLSKVKWTNRHGTGAVVISPTRELALQIYGVVADICKYHSQTYGICMGGANRKMEAD
KLQKGVAILVATPGRLLDHLQNTPGFVHKNLAVLVIDEADRCLEIGFEEEMHQIIKTLPK
KRQTMLFSATQTTKVEDLVRVSFKNKPVYVGVHDKGEVSTVSGLEQGFVIVPSENRFILL
YTFLRRNLKKKIIVFMSSCNAVKFYYELLNHVDIPVLDLYGRQKQNKRTTTFYKFCKAEK
AILICTDVAARGLDIPAVDWIIQFDPPDEPKEYIHRVGRTARGVNAKGKALLFLLPSEMG
FLRHLKAARVPLNEYEFPEKKMAKVQPQLEKLIGENYALNRSAKDGYRSYLQSYASHGMK
NIFNVHELDLNAVAASFCFDNPPRVNLNMMGSAKAPRRRGGGGGVGQGYKNNDKLRGVIR
QRNTGHAFSASNPYGKRGDSDARQFTH
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgccatcacaaaagcaagtcaagcccgacagcggaaagaccagaaagcgaaagaggaag
agcatcaacaaggaccgacaaccagaggatgatgtaccagcagcaaccgcggcggtggac
atgacagagaacatccccaatgttgctcatcaactcccagaaaaggatgccgccggtagt
aagcgtcggaagaaggccgtcaaatctgccgatgcacccggcgaggaatcgaaaaacatc
gatgacgaccactctcaagcggaggaggatcgtgttcaagcaaagccgcaacccaaaaag
caaagcaagatgcaagtcgacgaggtgaaagaggacgacatagccactgatggtgttttg
accaagcgccgcttcgacgaactcaacctctcagagaagaccatacacgccttgaaggac
atgactttcgaacgcatgaccgaggtccaggctcgctgcatcccgcatggcatggccgga
cgcgatgttcttggtgcagctcgcactggttcggggaagaccctcgcatttgtcatcccg
gtcattgagctgctgtcgaaggtgaaatggacaaaccgtcatggcacgggtgccgtggtt
atttcgccgactcgtgagctggctctccagatttacggtgttgtcgccgatatatgcaag
tatcactcgcagacgtatggtatttgcatgggcggtgccaatcgcaagatggaggccgat
aagctccagaaaggagttgctattctcgttgctactccggggcgccttctcgatcatttg
cagaacacccccgggtttgtccataagaatctcgccgtcttggttatcgacgaggccgat
cgatgtttggagattggctttgaggaggaaatgcaccagatcataaagacacttccgaag
aagcggcagacaatgctcttttcagcaactcagaccacgaaagtggaggacctcgtgcgc
gtgtcgtttaagaacaagccagtgtatgttggtgtacacgacaaaggtgaggtatcaacg
gttagcggtctcgaacaaggctttgtcattgtgccgagcgaaaaccgtttcattctcttg
tacaccttccttcgccgcaatttgaagaagaagatcattgtcttcatgtcgagctgcaac
gccgtgaagttttactatgagctcttgaatcatgtcgatattcccgtgttggatctctac
ggcaggcaaaagcaaaacaagcgtacaactacgttttacaagttttgcaaggcagaaaag
gctattttgatatgcacggatgtcgcagcgagggggcttgacattccagcagttgactgg
attattcaatttgaccctcctgatgagccgaaagaatacattcacagagtcggaagaact
gctcgcggagtcaatgccaagggaaaggctttgcttttcttgcttccttctgaaatgggt
ttcttgcggcacttgaaagctgctagagtgccgctaaatgaatatgagttcccagaaaag
aaaatggctaaggtgcagcctcaactggaaaagcttatcggtgaaaactatgcgctgaat
cgttcagccaaagatgggtaccgatcatatttgcaatcctatgcgagtcatggcatgaaa
aacatcttcaacgtacacgaactggatttgaatgccgtggcagccagcttttgttttgac
aaccccccaagagtgaaccttaacatgatgggaagtgcaaaagcgccacggagaaggggt
ggcggaggtggtgttggtcagggttacaaaaacaacgataagctgcgcggcgtaattaga
caacgaaacactggccatgctttctccgcctccaacccatatggaaaacgtggtgattcg
gacgcaaggcaatttacacattga
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