Chondrus crispus (carragheen): CHC_T00010240001
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Entry
CHC_T00010240001 CDS
T02916
Name
(RefSeq) ATP-dependent RNA helicase DBP2, putative
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CHC_T00010240001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccp03041
]
CHC_T00010240001
03009 Ribosome biogenesis [BR:
ccp03009
]
CHC_T00010240001
Enzymes [BR:
ccp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHC_T00010240001
Spliceosome [BR:
ccp03041
]
Complex A
U1 snRNP components
U1 related factors
CHC_T00010240001
Complex B
CHC_T00010240001
Ribosome biogenesis [BR:
ccp03009
]
Eukaryotic type
Pre-60S particles
Helicases
CHC_T00010240001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
17317716
NCBI-ProteinID:
XP_005710055
UniProt:
R7QQJ4
LinkDB
All DBs
AA seq
585 aa
AA seq
DB search
MSSYGGGGYGGGGGYGGGGGGGYANGGPPAGGYQAGGGGGYGGGGSGGYGGGGSAGYGGG
GSAGYGGYGGGGSGGYGGGGGGYGGSGGGGYGGGYGGGGGGYGGGGGGGELGANLKKLEW
NEAAYNSLPKFEKDFYMEHPDVKSRPPQEVEAYRLRHEISTKGSNVPRPTTTFDEASFPD
YVLDQIKACGFASPTPIQAQSWPVALTGRDVIGVAQTGSGKTCAYILPAIVHINAQPYLE
RGDGPIVLVLAPTRELAVQIKDECSKFGSSSRIKNTCVYGGVPKRGQAMDLERGVEIVIA
TPGRLIDFLESGKTNLRRVTYLVLDEADRMLDMGFEPQLRAIVGQIRPDRQTLMFTATWP
KDVVNISREFLKEEPVQVQIGSTELTANKDITQIVEVCDDHDKRRILFTRLDGIRAESGR
DFPKVLIFTETKRKADEICGDLRYDGFQAAAVHGDKNQSERDRALADFKAGRAPIMVATD
VAARGLDVKAVQCVINFDFPNNVEDYVHRIGRTGRAGAKGTSITLFTSNNSKSARDLIQL
MRDAGQEIPPKLEELARYARPGGGQSRYGRGGGFRRGGGGRGGRW
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttacggaggcggcggatatggcggcggagggggctacggcggcggcggcggc
ggcggatacgctaacggcggccccccggccggcggctaccaggccggcggcggtggcggc
tacggaggcggtggaagtggcggctacggcggcggcggaagcgctggctacggcggcggt
ggaagcgccggctacggcggctacggtggcggcggcagtggaggttacggcggcggcggt
ggaggttacggtggaagtggcggcggcggctacggcggcggctacggcggcggtggtggt
gggtacggaggcggcggcggcggtggcgagctcggcgccaacttgaagaagctcgagtgg
aacgaggccgcgtacaactcgctgcccaagttcgagaaggacttctacatggagcatccg
gacgtcaagagccgcccgccgcaggaggtcgaggcctaccgcctgcgccatgagatctca
accaagggctccaacgtcccgcgccccaccactacctttgatgaagcctcgttcccggac
tacgtgctcgaccagatcaaggcctgcggctttgcttcccccaccccaatccaggcccag
tcgtggcctgtcgccctcacgggcagggacgtcatcggcgtggcccagacgggaagtggt
aagacttgcgcctacattctgcccgccattgtccatatcaatgcccagccttacctggag
aggggcgacggccctattgtcctcgtcctcgccccgacgagggagctggctgtccagatc
aaggatgagtgctccaagtttggctcttcgtctaggattaagaatacctgcgtctatgga
ggtgtgccgaagcgcggccaggccatggacttggagagaggcgtcgaaattgttatcgcc
accccgggaaggctcattgactttttggagtctggtaagacaaacttgaggagggtcacc
tacttggtcttggatgaggctgaccgcatgcttgatatgggattcgaaccccagctcagg
gctattgttggccagattcgtccggataggcagactctcatgttcaccgcaacttggcca
aaggatgtcgtcaacatctcgagagagtttttgaaggaggagccggtccaggtccagatt
ggaagcactgagctcaccgctaacaaggacattacccagatcgtcgaggtttgtgacgat
catgacaagaggcgaattttgttcacacgtctggacggcattcgcgccgagagcggacgc
gacttccccaaggttttgatcttcacggagaccaagcgcaaggccgatgaaatttgcgga
gatctgcggtatgacggcttccaagccgccgccgtccatggagacaagaatcagagcgag
cgtgatcgtgccctggctgacttcaaggctgggcgagcgccgatcatggttgcgacagat
gtcgcagcccgcgggttagatgtgaaggctgtgcagtgcgtaatcaactttgactttccc
aataacgtagaggattatgtacatcgtatcgggcgaacggggcgtgctggggcgaaggga
acttctatcacgctcttcacttcgaataatagcaagagcgcgcgcgacctgatccagttg
atgcgcgatgctgggcaggagatcccgcccaagctagaagaacttgcgcgatatgcgagg
ccaggaggcggccagtctagatatggccgcggaggcggcttccgtcgcggcggaggtggc
aggggaggacgatggtag
DBGET
integrated database retrieval system
