Chondrus crispus (carragheen): CHC_T00010249001 Help Entry CHC_T00010249001  CDS       T02916                                  Name (RefSeq) THO complex subunit 2, putative   KO K12879   THO complex subunit 2 Organism ccp  Chondrus crispus (carragheen) Pathway ccp03013   Nucleocytoplasmic transport ccp03040   Spliceosome Brite KEGG Orthology (KO) [BR:ccp00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     CHC_T00010249001   09122 Translation    03013 Nucleocytoplasmic transport     CHC_T00010249001  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:ccp03019]     CHC_T00010249001    03041 Spliceosome [BR:ccp03041]     CHC_T00010249001 Messenger RNA biogenesis [BR:ccp03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     TREX complex      CHC_T00010249001 Spliceosome [BR:ccp03041]  Complex C   Other components    EJC/TREX     CHC_T00010249001  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     CHC_T00010249001 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Tho2 THOC2_N Thoc2 Motif Other DBs NCBI-GeneID:  17322982 NCBI-ProteinID:  XP_005715269 UniProt:  R7QDD4 LinkDB All DBs AA seq 1926 aa AA seqDB search MAPTDFSIGEQTAFDVLDALNPLLESQDAAIVLTVVAAIREANPPAEILASSLYIFSKLV LLNPDCTSAFREVVGYLVSTTLLPRQVLYEAIDVETHQLLEPTIARPAQEKRMRTRLWYT QTRFNLFGEASEGYAKVITLLGETIEATQPVDQRVVVKQLLALVGQFSLDTNRIIELVLS AAADVITGERERVGNLPLDHRLPPLFVSILDEFPRDHVHSVLGAIMQSYHPVNEATNESA TSQQTPSPPTATAAGSEKTAEVQKTPDSLYYLIGILMREGRMRISDVWHNLYPRDDRELA RKFLKYDEQIQALAKHVGSPYANRPQNAQTPAIFKRGGSSASKRDILTHYSWVTSGPFPA FSYQKLHFICVLIIMCRVDDVFDAIRCLGVNGTHIDIAAHPFICQALGKFAEALLNPLLN NRFPGFYASHSHISQAIGKLGGRANRCPGTVATVDELLDNDDNGPGAVIVRLLQILGPHA MTIPRVLQALCKLVRGRQDPRAITIMQDVVLPAASLLQSNVGLTEEIWSVLRGWSHEVRW RLYGNLHNQVAATSAVYQLVASQASYEMRYVLKRLTKETQKQHVTTIGKITRGQALPAFA AAIDRVQGYPPDVVTISPVIDACQDCSHLAVDMLLFLIVDRMADSRRSRLKDDGINIAQW YATLSLFLGLCLRKLPVTPQQIEGVLGFLYTKLVIHQEALLITALSDIIKCVAGVEVESN LTAKQVMAHGGGRALRDAVSGIWARLQPDSNLVGNVFDSKEEREQHSAVVALLTACRRTE MHVPIAIAIAQMSRDAAGHEDLRTMPLKLGANIVDIAQSSLSQLSRFMNSFSGHNDWERD LEADIWRPLQEMGISTLMTKMSVLTPFAVVLMSPTIPYLRRHPTIYTLDGATKIRVLKGG TVGASAPFPEESRKSRSMDDKKESATVGQTGATNVTDSSMLNGKGNGNASPAPGGLKPMD IVPKDADEDSVSQFGRIVAKRMKNLVATEFVTAFWTMKLDDIAVPVDMYESERKRILLAM SAWEKEVDRNRRLTNHIDQERRRRCEAELRRIRDFVDLLDAERKAYAQKQATTLEALKAS LGEHRSPLASRPAHDMEMAVNLFLQECVIPRCKLSICDALFCSRFLRMMIELDIPVLCFS TYFRTLLKLTPVVLRSCSENEALGFARLLKEVLTTLEKWRSNRKVFDAEAAGGKKHGFRD PDSSGAQPLRHEQYCEWLFEIHEGLTEGISRVLVAKEYLYTRNSLCILASIAEVFPKVSE HASQLETSVGKMCKSELPDIRLSSTGVLARLKSGHAKRLPRHIFMLKPSAGSAASGGGLA GKGRVSARDDHASKLSAVRKDAKIGKISGSDGRTKTETRTSQVVVSSGVNVNAPRSISKE SKRGDQKAALDPSAQEFVPDVQSGRGGHGDGNRMVGGGKNGKRGRDADDSGPNRSSQQAV GSAGRRPHQQELEPHAKRAKGGDERRSDEGMKKTNSGKPNEEKPQSRDASGRSGGTQIGS NKKTAAPAMNSAKGLSQKRGSTREGHARDSGGRDGANRPISGSSSRNGVNRDGSNHHGPG HASKSRDTQARSPPRRDASNRSPGGREAAGRSPQKREPLGRGGQGRDSSGHSPSRRNNGG RSPLRRELLPRAQGNRDAPSRNPGGRDLSRRESSGKDGPGREGNPREDQGRSSSRRESPG QPLQRKTSGGELQGREPNGVSGRDTSRRRRVPDGQGGIQFGPSGDTRIAVRDLPELESFG DGHGMKRRRENTRDAYAFDGDNRRSTRQRAEGAYRERQPSRESPNMRFGGPNSPPRTPGR AFPGQGPPGKSNWGEHTRSRSHDGPHDMRAGNGGPPRRREHELEQGPPWKSRQNDRHMEF EGRERGPVRGRDGPRGGDFGGYEERGPNRGGDRYMDRRNEGREDRGSRDRGFGRKVHARP GGRRRA NT seq 5781 nt NT seq  +upstreamnt  +downstreamnt atggcaccgactgatttttcgatcggcgagcaaactgcctttgacgtccttgatgccctc aatccgctcctagagtctcaagatgctgccattgttcttactgttgtcgccgcaattcgc gaggccaacccacccgccgagattctcgcctcttcgctctacatcttcagcaagctggtt ctactcaatcctgactgtaccagtgccttccgcgaggtcgtcggctatctagtctccaca actctgcttcctcgtcaggtgctgtatgaggccatcgacgtggagacccaccagcttctc gaaccgacaatcgcccgcccggcgcaggagaagcgcatgcgcaccaggctctggtatact cagaccaggttcaatctgtttggcgaagctagcgagggctacgcaaaagtcattacgctt ctgggggagactatcgaggctacgcagccggtcgaccagagggtggtcgttaagcaattg ttggccttggtggggcaatttagcctagacactaatcgcatcatcgagttggtgcttagt gctgcggccgatgttatcacaggagaaagggaacgcgtgggcaatctaccgctcgaccac cgtttaccgcctcttttcgttagcattctggatgaattcccgcgggatcacgtccacagc gtcctcggcgccatcatgcaatcgtaccatccggtcaatgaggccacgaacgaaagtgcg acctcgcagcagacgccgtcgccgcctacagccacggctgccggttcggagaagacagcg gaagtccagaagacccctgattctctatactacttgattgggattttaatgagggagggc agaatgcgtatctccgacgtttggcacaacctttacccgcgtgatgacagggagctggcc aggaagttcctgaagtacgatgagcagattcaagctctagcgaagcacgttggctcgccg tacgcgaacaggccgcagaatgcgcaaacccctgccatcttcaagaggggtgggtcgagt gcgagcaagagggacatacttacgcactacagctgggtgacgtcaggcccctttccggcg tttagctaccaaaagctccacttcatctgcgttcttatcattatgtgcagagtggatgac gtctttgatgcaatccggtgccttggggtcaatggcacccatatcgatatcgccgcgcat ccttttatctgtcaggcgttggggaagtttgcagaggctttgctcaatcctctgctaaac aacaggttcccgggtttttacgccagccacagccacatctcccaagccatcgggaaactg gggggacgagcaaaccgttgtcctggcacggttgcaacggtagatgaattgttggacaac gatgacaacggtccaggagctgtcatcgtcaggcttctacagatcctgggtccacatgcc atgacaattccgcgtgttctccaggcattgtgcaagcttgtgcggggtcgacaagatccc agagccataaccatcatgcaagacgtagttcttccggcggcatctttgctacagtctaac gtgggactgacggaagagatatggtctgtattgagaggttggtcgcatgaagtgcgatgg cgtttgtatggcaacttgcacaaccaggttgcggcaacttcggctgtgtaccagctggtg gcgagccaggcgtcatacgaaatgagatatgttctcaagcggctcacgaaagagacgcag aaacaacacgtcacgaccatcgggaagattactcgtggtcaggccctgcctgcgtttgca gctgccatcgaccgagtgcaaggatatccgcccgacgtcgtgacgattagccccgtcatt gatgcgtgtcaagactgttcgcatttggctgtcgacatgctgctgtttctcatcgtcgat cgcatggcagattcccgccgtagtcgactcaaagatgatgggatcaacatcgcgcaatgg tatgcgacattgtcccttttccttggcctctgtttgaggaaactgccagtcaccccgcag caaatagagggtgtgttgggcttcttgtacaccaaacttgttatacatcaagaagcgctg ctcatcacagcactcagcgacattatcaaatgcgtcgccggggttgaagttgagagcaat ctgacggcgaagcaggtgatggcacatggcggagggcgggcgttgcgcgatgccgtttct ggaatatgggcacggttacaacccgactccaatcttgtgggtaacgtattcgattcgaaa gaggagcgggaacagcactctgctgtagtagcactgctgacagcatgcaggaggacagag atgcatgttcccatcgcaatcgccattgctcagatgtcgagagatgcggccggtcatgag gatttgcggacaatgccgctgaagctcggagctaacattgtggacatcgcgcaatctagc ctgtcacagctttcaaggttcatgaactctttctcagggcacaatgattgggaaagagat cttgaggcagacatctggcggcctcttcaagaaatgggaattagcacattgatgacgaaa atgagtgtgcttactccttttgcggtggttctcatgtctcccacgataccttacctccgc cggcaccccactatctatactctggacggtgccacaaaaatccgagttttgaaaggggga acagttggtgcgtctgctccatttccggaggaaagcaggaaaagcagaagtatggacgac aagaaagagtcggctactgtggggcagactggtgccacaaacgtcacggacagctccatg ttaaacggaaaagggaatggcaatgcgtctccagcgcccgggggcttaaaaccgatggat attgtaccaaaagatgccgatgaggatagtgtttctcagtttggacgaattgtcgcgaag cgaatgaaaaacttggtggccacggagttcgtcacagcgttttggactatgaagcttgat gacattgccgtgcccgtggacatgtatgaatcagaaaggaagaggattttgctggctatg agtgcatgggaaaaagaagtggacaggaaccgtcgactcactaatcacattgaccaggag cgacgacgacgctgcgaagcagagctacgaagaatacgtgatttcgtggatttattagac gctgaaaggaaggcgtacgcccagaagcaagctaccacactggaggctcttaaggcatct cttggagagcatcgttcccccctagcatctcgacctgcacatgacatggaaatggctgtc aatttgttcttgcaggaatgcgttatccctcgatgcaaactctccatttgcgatgccctc ttctgctcccgctttctacggatgatgatagagttggacattcccgttctttgtttttcg acctactttcgaacgttattgaagttgactccagttgtgctgcgcagttgttcagaaaac gaagctctgggtttcgcccgcctattaaaagaggtgctgacaacgttggagaaatggaga agcaaccggaaagtctttgacgctgaggctgcgggaggaaagaaacatggcttccgagac cctgacagctctggtgcccagcctctccgccacgaacagtactgcgaatggctctttgag atccacgagggtctgacggaagggatttccagagtgctcgttgcgaaggaatacctatat acacgcaactccctttgcatacttgccagtattgcagaagtgtttccgaaggtttccgaa catgcatcacaacttgaaacaagtgtcgggaagatgtgcaagtcagagcttcctgacatt aggctgtcctcgacgggtgtattggcgcgattgaagagtggccatgcgaaacggttaccg cggcatatctttatgcttaaaccgtcggcagggtctgcagcatctggtggtggtttggca gggaagggaagggtttctgcccgagacgaccatgcatcgaagttatccgccgtacgcaaa gatgcgaagatagggaaaatttcgggctcggatggaagaaccaaaactgagacgcgaacg tcacaggtcgtcgtgtcctcgggtgtgaatgtgaatgctccccgaagcatatcgaaagaa tctaagaggggagatcaaaaagctgccttggatcctagcgcccaagaattcgttcctgat gtgcagagtggccggggaggacatggtgatggtaacaggatggttggtggaggcaagaat gggaaacgtgggcgagacgctgatgatagcgggccgaaccgttccagccagcaggctgtg ggtagcgccggacgaagaccacaccaacaggaactcgaaccgcatgcaaagcgagcgaag ggtggcgatgagcgacgcagcgatgaggggatgaagaaaactaattctgggaagccaaat gaggagaaaccccaaagccgtgacgcgagcgggagatctggtggcacccagatcggatcg aacaagaagaccgctgcacctgcgatgaactctgcaaagggcctaagtcagaagcgtggt tctacgcgtgagggtcacgctcgtgatagcggaggtcgggatggtgctaatcgtccaata tctggaagctcaagccgcaatggtgtcaaccgagatgggtccaaccaccacggacctgga cacgcaagcaagagccgtgacactcaagctcgaagtccacctcgccgagatgcttcgaac cgcagtccaggcgggcgtgaggcagccggtcgcagccctcaaaagcgggaacctctcggg cgtggagggcagggaagagattcatcaggccacagcccatcaagacgcaataacggtgga agaagccccctaagacgtgagctgctgcctcgcgcacagggaaaccgagacgcaccatcg cgtaaccccgggggtcgggatctatcgcgaagagaaagctctggtaaggatggccctggt cgcgagggaaaccctcgcgaagatcagggtcgaagcagctcacgaagggaatctcctggg caacccctgcagcgcaagacgtctggcggagagctgcaaggacgcgaaccgaatggagtc tctggcagagacacctcccgccgaaggcgagtcccagatgggcagggcggcatacagttt gggccatcaggggatacaagaatagctgtacgtgaccttccggagttggagtctttcgga gatgggcatggcatgaagcgaaggagagagaacaccagagatgcctacgccttcgatgga gataacagacgatcgacgaggcagagggcagagggtgcatatcgggagaggcagccatca agagaatcaccaaacatgagattcggtgggcctaattcgccgccgcgaacaccaggtcgc gcattccctggtcaagggccccccggcaagtctaactggggtgagcacacgcgctctcga agccacgatgggcctcacgacatgcgcgcaggcaacggtggccctccgcgccgtagagaa cacgagctggaacaaggtcctccgtggaaatcacgacagaatgatcggcatatggagttt gaagggcgggagcggggccctgtgcgtggcagagatgggccaagaggtggagactttggg ggttacgaggaacgcggacctaatcgtgggggggataggtatatggatcgacggaatgaa ggtcgagaggacaggggatctcgagatagaggtttcggacgaaaggtgcatgctcgtcca ggcggaagacgtcgtgcttag

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