Chondrus crispus (carragheen): CHC_T00010271001
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Entry
CHC_T00010271001 CDS
T02916
Name
(RefSeq) Pre-mRNA-splicing factor SYF1, putative
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CHC_T00010271001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccp03019
]
CHC_T00010271001
03041 Spliceosome [BR:
ccp03041
]
CHC_T00010271001
Messenger RNA biogenesis [BR:
ccp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
CHC_T00010271001
Spliceosome [BR:
ccp03041
]
Complex B
Other components
Prp19-related factors
CHC_T00010271001
Complex C
CHC_T00010271001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
Suf
ARM_TT21_C
HAT
Motif
Other DBs
NCBI-GeneID:
17320785
NCBI-ProteinID:
XP_005713055
UniProt:
R7Q3Z3
LinkDB
All DBs
AA seq
971 aa
AA seq
DB search
MSTSALNRPRPIQSINPHLPRQRCPDDCAPARVYPHLAPRMLRTTAALALEERVTRDPYA
LSSWLSYISHVSKQPSSQGALFCVYERAVAALPGSYKVWRAYAHAFREYASTFHPMHPAR
QAALDVSNRAARALRLSPVLWREYIEHLLDEARWTAVRKAANDALRVLPILQHETIWHLL
MEHMVDAKGVPPRVSVLLLRRYAKLRPGKGRERLFRHLLKAKCWDQAVSHLCAALADPDW
IPEGKKTREQLWMELARVAARHPKEVTCVDVPELFRGAITTAKTDVGELWVVFGEYFIRK
GLFEDARNVYEDAITRVDVVRDFAVVFDAYAKFEESLVSAAMEDVEAIKDELKEAGEEED
RSKELKEANEMVELLIARLEYLTNRRPMLLSDVRLRQNPHNVHEWHKRARMFKQAKDAPN
VVDTYSKAVQTVNPWRATNGRPHTLWLAFARYYEDASELESARQVLEKAVSDPEGFKGPE
DLAAVWCEYAEMELRCKTPEAARSILIRATTQPDRKRREEAKNRRGESNSNAAAVAGTGV
GNARIKHVYDTSSPAWNFYKSMRLWHFLIDLTQSISTTDEVLKMHHSMFDMRIASPQTVL
SGASYLERQSLFEQAFRLYDKGTSVLSWPDALQVWVVYLTRFVKRFGSRKLERARDLFEE
AIRSAPSTRRGGYELPHPQLGLLYIMYAEMEEEHSLARHALKVLSRAVKAVQEEDRADLY
RLYIVKTATLFGSTKTRNIYEEAMSSLTRSEDVLEFAIRYAGMETRVGEIDRARGIYDHT
CQVADPRRRGIYEIFWTSWNDFELSHGSEDTFRDMLRKKREVQLNHKGVIMDDDVLLNGE
AIPRGKQREAETRASTLQTSPHTAEPTAPVSNTEEIQLDLDLDEDDETGRPETTEVKDEK
SGEQDNSKKDEKLNIVQKELPEALKMLVGTAHPDAKRKRDEDEVETKEMNADDGKPLGAL
ERIKRSRTNKV
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgagtacaagcgctctcaatcgtccccgtccaattcagtcaataaatccacatctccca
cgccagcgatgccccgatgactgcgcccccgcacgcgtttacccccatctcgcaccgaga
atgcttcgcactaccgctgccctagctttagaggagcgcgtaacccgagacccgtacgcc
ctatcttcctggctttcctacatatcccatgtatcgaagcaaccctcatcccaaggcgct
ctcttctgtgtgtacgagcgtgccgttgcagcactgccgggaagctacaaagtgtggcgt
gcgtacgcccacgcctttcgcgaatatgcgtccacatttcacccgatgcaccccgcgaga
caggccgctctcgacgtgtcgaaccgcgctgcccgcgcactgcgccttagcccggtgctg
tggagggagtatattgagcacttgctggacgaggccagatggacggctgtgaggaaagct
gcgaatgatgcgcttcgagtgcttccgattttgcagcatgaaaccatttggcatctcttg
atggagcacatggtcgatgcgaagggcgtcccaccgcgagtcagcgtcctcttgctacga
agatacgccaagttgcgtcccggcaagggaagggagcgcttgttccgccacttgctgaag
gcaaagtgctgggatcaagccgtcagccatctgtgcgctgctttggcggatccggattgg
attcctgagggtaagaaaacgagggagcagctgtggatggagcttgctcgagttgcagcc
cggcatccgaaggaggtgacttgcgtcgatgtgcccgaactgtttcgaggggccattacc
acggcgaagaccgacgttggtgaactgtgggtcgtgtttggtgaatactttatccgaaag
ggcttgtttgaggacgctcggaacgtctacgaggacgcgattacgagggttgatgtggtc
agagattttgctgtagtcttcgatgcgtacgccaagtttgaggagagcttggtcagcgcg
gcaatggaagacgtggaggcgattaaagacgagcttaaggaagctggcgaggaggaggat
agaagcaaagagttgaaggaagccaatgaaatggttgaacttctaatcgctcgcctcgaa
tacctgaccaaccgacgtccgatgttgctttcagatgtacggctcaggcagaaccctcac
aacgtccacgaatggcacaagcgtgctcgcatgtttaagcaagcaaaagacgcccccaac
gtcgttgatacctacagcaaagctgtgcagaccgtaaatccttggcgtgcgacaaacggt
aggccgcacactttgtggctcgctttcgcgaggtattacgaagacgccagtgagcttgag
tcggcgcgtcaagtcctggagaaggctgtgtcggatccagaaggctttaaaggccctgaa
gatctggctgcagtctggtgtgaatatgctgagatggagctgagatgtaagacaccagaa
gcagcacgtagcattctcatcagggcaacgacgcaacctgaccgaaaacgaagagaagaa
gcgaagaatagaagaggcgagtcaaattccaatgccgctgctgtagcagggaccggagtt
ggaaacgctagaatcaagcatgtctacgacacgtccagtccagcgtggaacttttacaag
tctatgcgactgtggcacttcctgatcgacttaacccagtccatatcgacaacagacgaa
gtactcaaaatgcatcactcgatgtttgacatgcggatcgcgtctcctcaaacagtgctc
agtggtgcatcttacctcgagcggcagagcttgttcgaacaagcttttcggctctacgat
aaggggacgtccgtgctatcatggcccgatgcgttgcaggtctgggtcgtttacctgacg
agattcgtaaagcgtttcgggtcgcgaaaattggagcgagccagagatttgtttgaggaa
gccatacggtcagctccaagtactcgtcgaggagggtatgagctgccgcaccctcaacta
gggctcctatacatcatgtatgccgaaatggaagaagaacacagtctcgcgcgtcatgcg
ttgaaggttctgtctagagctgtgaaggctgtccaggaggaggaccgcgcggatttatat
cgattgtacatagtcaaaacagccactctgtttggaagcacaaaaaccagaaacatttac
gaggaagcaatgtcgtcgttgacaaggtcggaggatgtgttggaatttgcaatacgatac
gcaggcatggaaacccgagttggcgagattgaccgcgctcgcgggatatatgatcataca
tgccaagtcgcagatcctcggcggagaggtatctatgaaatattttggacgtcctggaat
gactttgagttgtcgcatggttcagaggatacattccgggacatgctacgaaagaagagg
gaagttcagctgaatcacaagggagtcatcatggatgatgatgtccttctgaacggcgaa
gcgattcctcgagggaagcagagggaagcagagacccgtgcatcgactctacagacaagt
ccacataccgctgagccgactgcaccagtgtcgaatacggaagagattcaactagattta
gatctcgatgaggacgatgaaacgggtcgtccagaaaccacagaggtgaaggacgagaag
agcggagagcaagacaactcgaagaaagacgaaaagctgaatattgtacaaaaggagctg
ccagaggccttgaaaatgctggtgggcacagctcatccagatgcgaaaagaaagcgggat
gaagatgaggtagaaaccaaagagatgaatgcggacgacggaaaaccgctgggagcattg
gagcgcatcaagcgcagccgtacgaataaagtttga
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integrated database retrieval system
