Chondrus crispus (carragheen): CHC_T00010288001
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Entry
CHC_T00010288001 CDS
T02916
Name
(RefSeq) similar to PRP6 pre-mRNA splicing factor 6 homolog
KO
K12855
pre-mRNA-processing factor 6
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CHC_T00010288001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccp03041
]
CHC_T00010288001
Spliceosome [BR:
ccp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
CHC_T00010288001
Complex C
U5 SnRNP specific factors
CHC_T00010288001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_14
PRP1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_19
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
Suf
TPR_CcmH_CycH
TPR_16
ARM_TT21_2nd
Motif
Other DBs
NCBI-GeneID:
17321502
NCBI-ProteinID:
XP_005713785
UniProt:
R7Q9A7
LinkDB
All DBs
AA seq
944 aa
AA seq
DB search
MSLNPSRAGGPPRRLLGDARRENAEAQHVAAAKRLRLSVRPRTXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXKRRRLLSDPEPAYPPPPDDAPLFASASASADDEEADAVYAAVD
ARMASRRQKARDARLQHDLAAYRRANPTLRHQFADVKAALTAVSVREWAAIPDIGDYSVK
TRRWEKYTPAPDSLLERARQETAHTAAEGGRAHAATDLASIGAGRSSVLGQNLDREGGAL
PAAAHARVDPHGYLNDLAAGPAPPANLADIKRTRMLLRSVTATNPTHAPGWIAAARLEEH
AGKLPAARHLILEGCRRCPRHEDVWVEATRLHPRTVGRRILAQAVKTVPRSEKVWLQAAT
LEEDTPRKRRVLLKALEIVPTSHALWKAAVELEEPAGARILLARAVECAPQAVDLWLALA
RLQPYQAAKATLEKAQQVVRANPVVFITAAQLEESKGGRESPAIKIVLERGVNMLSVASD
VVKRGEWLKLAEESDRGGYPGTVGAIVETAIALGIDEADRERVWTEDAQGMESNNCKGVA
RAIYARLSATFPTRTDLWQVYAAFERRNADRNKVQGVLEEAVAHCPEAETLWLMLAKDKW
KSDGADEARVVLARALEANPGSQAVRLAAAKVQTESGEYQKARSILAQAREQVPSARVFM
KSALLERQLANWGGEKKFLQDGLAKYPKGEKLWLMLAQWHERAELRGDMELEPVAAGGQF
TEIAKLSTPRAVYASAVDKCRKNVHLWIGYARLEERRGSISKARAILERGRESCKGGEKI
DILWRESVSLEVRDSRSKAGTSLLARALQECKHSGRLWAMSVALEPRAGQKSKSVDAIKH
CPEEGIVILEVAKYIWRSGKQDKARTWLKRSVEVDPDWGDSWATLLAFEREHGSADAAAE
VERRAIDAEPKHGDKWVAISKQVGNEVLTIKDILYKVADSAGKV
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgagtctcaacccaagccgcgcgggcggcccgccgcgccgcctgctcggcgacgcccgc
cgggagaacgcggaggcccagcacgtcgccgccgcgaagcgcctccgcctttctgtccgc
ccccgaaccagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagcgccgc
cgccttctatccgacccggagcccgcgtacccgccgccgcccgacgacgccccgctcttc
gcctccgcgtccgcctcggcggacgacgaggaggctgacgccgtgtacgccgccgtcgac
gcccgcatggcgtcgcgccgccagaaggcccgcgacgcccgcctgcagcacgacctggcc
gcctaccgccgcgccaaccccaccctgcgccaccagttcgccgacgtcaaggccgcgctc
accgccgtctccgtgcgcgagtgggccgccatcccggacatcggcgactactcggtcaag
acccgccgctgggaaaaatacaccccggccccggactcgctgctggagcgcgcccgccag
gagaccgcccacaccgccgccgagggaggccgcgcacacgctgccaccgacctggccagt
attggcgcgggcaggtcttccgtgctcggccagaatctcgaccgcgagggtggcgccctg
cccgccgccgcccacgctcgcgtcgacccgcacggctacctcaacgaccttgccgccggc
ccggccccgcccgcgaacctcgccgacatcaaaaggaccaggatgctcttacgctcagtc
acggccacaaaccccacccacgcccccggctggatcgccgccgcccgcctggaggagcac
gcggggaagctgccggccgccaggcacctcatcctcgagggctgtcgccgctgcccccgc
cacgaggacgtatgggtcgaggccacgcgcctgcacccgcgcacagtcggccgaaggatt
ctggcacaggccgtcaagacggtgcccaggtcggagaaggtctggctgcaggccgctacg
ttggaggaggacacgcccaggaagaggcgcgtgctgctcaaggccctcgagattgtcccc
acgagtcacgccctgtggaaggcggccgtcgagcttgaggagcctgccggcgcccgcatt
ctcctggcccgcgccgtcgagtgtgccccgcaggcggtggacttgtggctggctttggcg
cggctccagccgtaccaggcggcgaaggctacgcttgagaaggctcagcaagtcgtccgc
gcaaaccccgtcgtgtttattaccgcggcgcagctggaggaaagtaaaggcgggcgcgag
agtccggcgatcaagatagtgttggagcgaggggttaacatgttgtctgttgcatccgac
gttgtcaagcggggtgagtggctcaagctagcggaggaatcggaccgcggcgggtatccc
gggacggtcggtgctattgtggagaccgcgatcgctctcggcatcgacgaagcggatagg
gaaagagtatggacggaggacgcacaaggcatggagagcaacaattgcaagggtgtggca
cgagcgatctacgcccggctctccgcgacgtttccgacgaggacggacctgtggcaagtg
tacgccgcgtttgaaaggcgcaacgcggatcggaacaaggtgcaaggcgtcctggaagag
gctgtcgcgcattgccccgaggcagagacactgtggctcatgctggcaaaggacaagtgg
aagagcgatggtgcggacgaggccagggtggtgctcgcaagggcgctcgaggcgaacccc
ggctcgcaagcagtgcggctcgcagcagccaaggtccagacggagagcggggagtaccaa
aaagctcgctcgattctagcgcaggctagagagcaagtcccctccgcgagggtgtttatg
aagagcgcgttgctggagaggcagcttgcaaactggggtggagaaaagaagtttctgcag
gatgggcttgcaaagtatcccaagggggaaaagttgtggctgatgctcgctcagtggcac
gagagagcagagcttcgcggggatatggagctggagccggtcgctgcagggggtcagttt
acggagattgcgaagttgtcgaccccgagagctgtgtatgcgagcgccgtggacaaatgt
agaaaaaatgtgcacttgtggatagggtatgcgagactcgaggaacgacgtgggtcaata
tcgaaagctcgggcaatccttgagcgtggtcgagagagttgcaaagggggtgagaaaata
gatatactgtggcgtgaaagcgtgtctctggaagtgcgagattcaagaagcaaagcgggt
acatccttgctcgcacgagcactgcaggaatgtaagcactctggtcggttgtgggcgatg
agcgtggctctggagccaagagccgggcagaaatcaaagagcgtagatgcgatcaagcac
tgtccggaagaagggattgttattcttgaggttgcaaagtatatctggcgctctggaaag
caagacaaggctcgaacttggttgaagcgcagtgtagaagtagaccccgactggggggac
agctgggcaacgttgctagcgttcgaacgcgaacacggcagtgctgatgcagcggcggaa
gttgaaaggcgtgcgattgacgctgaaccaaagcatggcgataagtgggttgccatatcg
aaacaagtgggcaatgaagttctcacgatcaaagacatcttatataaagttgccgactcc
gctggaaaggtttaa
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