Chondrus crispus (carragheen): CHC_T00010295001
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Entry
CHC_T00010295001 CDS
T02916
Name
(RefSeq) Putative Pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03040
Spliceosome
ccp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CHC_T00010295001
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
CHC_T00010295001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccp03041
]
CHC_T00010295001
04121 Ubiquitin system [BR:
ccp04121
]
CHC_T00010295001
03400 DNA repair and recombination proteins [BR:
ccp03400
]
CHC_T00010295001
Enzymes [BR:
ccp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
CHC_T00010295001
Spliceosome [BR:
ccp03041
]
Complex B
Other components
Prp19 complex
CHC_T00010295001
Complex C
Prp19-CDC5 complex
CHC_T00010295001
Ubiquitin system [BR:
ccp04121
]
Ubiquitin ligases (E3)
U-box type E3
CHC_T00010295001
DNA repair and recombination proteins [BR:
ccp03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
CHC_T00010295001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Prp19
WD40
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR5
Beta-prop_WDR3_1st
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML_2
Beta-prop_EML
Beta-prop_WDR3_2nd
EIF3I
Beta-prop_TEP1_C
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
zf-Nse
Beta-prop_NWD2_C
Beta-prop_DCAF4
Seryl_tRNA_N
Beta-prop_SCAP
U-box
Goodbye
Beta-prop_EIPR1
HTH_8
DUF1513
Beta-prop_TEP1_2nd
Motif
Other DBs
NCBI-GeneID:
17322716
NCBI-ProteinID:
XP_005715006
UniProt:
R7Q9H2
LinkDB
All DBs
AA seq
531 aa
AA seq
DB search
MAAPQSSSGMFCSISGIVPDVPVVSAKSGHIFERRLIEQALEASDGRCPETGEPLSTSDL
IEIKKSGTVVEPLVPAEVSVPGVLRHLQKEWDTTMLELHQVKTELNETRKELANALYKYE
TAERVIAKMNQDMKESATARASDEVQTDETNGARVEAAAAGEVKKDATQDSKTSDRVMVK
DKVVTGRDATADVSSSTRTEFPEELLKKVKARSAELQKKRKERKVPASHARADTLKSLSE
TGQVAVDGSEATVTSLARGADGLMYGGTSSGKLMTLDTRGMGVVGKAVVGHTDGGVKRVR
WDGERVVSCGAGSVKIWDGQTWEQLGGWEETGEVVDVDVHPTKEVVFVVLAEGKWVWREL
GGRVVCEGQGGEGYGSGVVHPDGMVFATGRTDGVVEMWDLRTMKCVAELGERGGRVVSLE
MSEKGYYMASCRDGRVSLWDLRKQTVSGEVGMEGVVGLALDGVGEFGGAVGAGGVAVFMG
KKKTKTVVKVPMHKWQVGGAGRQGCAWGDDAGCIVVGGADGTVRQYGAGVQ
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggccgccccccaaagctcttcggggatgttttgcagcatctcaggcatcgtccctgac
gtgcctgtggtgtccgccaagagcgggcacatcttcgagaggcgtctcatcgagcaagcg
ttggaagcttccgacgggcgatgccctgaaacaggagagcctctctccacgtcggatctg
atcgagataaaaaagtctgggacagtagtcgaacctttagtgccggcggaggtgtcggtg
cccggagtactgagacatctacagaaggagtgggatacgacgatgctggagttgcatcag
gtcaagacggagcttaatgaaacaagaaaggagctagccaacgcgttgtataaatatgaa
acggcggaacgcgtaatcgcaaagatgaatcaggacatgaaagaaagtgctacggcgcga
gcttccgacgaggtacaaactgatgaaacgaacggggctagggtcgaggcggcggcagca
ggcgaggtgaagaaggacgcgactcaagacagcaagacgagcgacagggtgatggtcaag
gacaaagtggtgacgggcagagacgcgactgcggacgtgtcatcatcgacaaggacggaa
tttccagaggaactgctgaaaaaggtgaaggcgcggtccgccgagctccaaaaaaagcgg
aaggagcggaaggtaccggcgtcacacgctcgggcagatacactgaaatcgctatcggag
actgggcaagtggcagtagatggatcggaagcgacggtgacaagcttggcgcggggggcg
gacgggttgatgtacggcgggacgagcagcgggaagctaatgactttggatacacgagga
atgggagtggtgggaaaagccgtggtgggacatacagacgggggtgtgaagagggtgaga
tgggatggggagagggtggtaagctgcggtgctgggtcggtgaaaatatgggatgggcag
acgtgggagcagttgggagggtgggaggagactggggaggttgtggatgtggacgtgcac
ccaacgaaagaggtggtttttgtggttctggcagaggggaaatgggtgtggcgggagctc
ggcgggcgggttgtctgtgagggacagggaggggaggggtacgggagcggggttgtgcat
ccggacgggatggtgtttgcaactgggcggaccgacggggtggtggagatgtgggacttg
cggactatgaagtgcgtcgcggagctcggggaacggggggggagggtggtgtcgttggag
atgagcgagaaggggtactacatggcgagctgccgggacgggcgggtgtcgctgtgggac
ctgaggaagcagacggtatcgggtgaggtagggatggagggcgtggtggggttagcgctg
gacggggtgggtgaatttgggggtgcagtgggggcgggcggcgtggcggtgttcatgggg
aagaagaagacgaagacggtggtcaaagtgccgatgcacaagtggcaggtggggggcgca
gggcggcaggggtgtgcgtggggtgacgacgcagggtgcattgttgtaggtggcgcggac
gggaccgtgcggcagtacggggccggtgtgcagtga
DBGET
integrated database retrieval system
