Chondrus crispus (carragheen): CHC_T00010300001
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Entry
CHC_T00010300001 CDS
T02916
Name
(RefSeq) exosome component 5 Rrp46
KO
K12590
exosome complex component RRP46
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHC_T00010300001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccp03019
]
CHC_T00010300001
Messenger RNA biogenesis [BR:
ccp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CHC_T00010300001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF6496
Motif
Other DBs
NCBI-GeneID:
17321076
NCBI-ProteinID:
XP_005713365
UniProt:
R7Q866
LinkDB
All DBs
AA seq
274 aa
AA seq
DB search
MSVSTASNTRPDALEFSGVGTGVDAMSGTPLSAGRRDGRSASEMRSLSISHGPLVAADGS
ARVRLGATDVVVAVYGPMGCPVPRQDAEQMHVSVAFRRRAGTTSGGAGGKGDSINAGKEA
IAGRDLKKVVEEIVMAILHPRKAAVVAVQVLADNGGVIAAAINGTVMALVDAGMPMRAVP
SAASVSLYNGAIVVDPVLIEEVEADGVITFVFDTSLADENGFMSVYTDGDCTGDSMFAAA
LETSRDLALKTMAFLKLSLEQKAAQRLTWNTTKT
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtcagcaccgcatccaacacgcgccctgatgccctcgagttttccggcgtcggg
acgggcgtcgacgccatgtcaggcacgccgctctccgccgggcgacgggacggccgttcg
gcatcagagatgcgatcgctctccatctcacacgggccgctcgtcgccgccgacgggtct
gcacgtgtgcgtctcggcgcgacggacgtcgtggttgctgtgtacggccctatgggctgc
cccgtcccgcgccaggacgcggaacaaatgcatgtcagcgttgcgtttcggagacgcgca
ggtaccacgtcgggaggagcggggggtaaaggggattcgattaacgcgggtaaggaagca
attgcgggaagggatcttaaaaaggtcgtagaggagatcgtcatggcgattttgcatccc
cgcaaggccgccgtcgtcgcggttcaggtactcgcggacaatggcggagtgattgccgct
gctattaatggtactgttatggccctcgtcgatgcgggaatgccgatgagagcagtgcca
tcggcagctagtgtgtctctgtataacggagccatcgttgttgaccctgttctcatcgaa
gaggttgaggcagatggtgtgattacgttcgtatttgatacatctcttgccgacgaaaac
ggctttatgtcagtctatacagacggcgactgtacaggagattccatgtttgccgccgcg
cttgaaacttcccgcgacctcgccttaaaaacaatggcgtttctcaagctcagccttgag
caaaaagcggcccaacgacttacctggaatacaacaaaaacctag
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