Chondrus crispus (carragheen): CHC_T00010334001
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Entry
CHC_T00010334001 CDS
T02916
Name
(RefSeq) Replication factor-a protein 1 Rpa1
KO
K07466
replication factor A1
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03030
DNA replication
ccp03420
Nucleotide excision repair
ccp03430
Mismatch repair
ccp03440
Homologous recombination
ccp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CHC_T00010334001
03420 Nucleotide excision repair
CHC_T00010334001
03430 Mismatch repair
CHC_T00010334001
03440 Homologous recombination
CHC_T00010334001
03460 Fanconi anemia pathway
CHC_T00010334001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccp03000
]
CHC_T00010334001
03032 DNA replication proteins [BR:
ccp03032
]
CHC_T00010334001
03400 DNA repair and recombination proteins [BR:
ccp03400
]
CHC_T00010334001
Transcription factors [BR:
ccp03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
CHC_T00010334001
DNA replication proteins [BR:
ccp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
CHC_T00010334001
DNA repair and recombination proteins [BR:
ccp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
CHC_T00010334001
MMR (mismatch excision repair)
CHC_T00010334001
DSBR (double strand breaks repair)
HR (homologous recombination)
CHC_T00010334001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
SHLD2_OB1
Ddi2_HDD
DUF223
Motif
Other DBs
NCBI-GeneID:
17319914
NCBI-ProteinID:
XP_005712204
UniProt:
R7Q3F5
LinkDB
All DBs
AA seq
649 aa
AA seq
DB search
MSPESELSRNTIKHIYVTSDTSSNPVVQICELKRISQANANASAPPRYRLAVSDGVHFQQ
AMLATQLNSLIDDGKISLFCLVRLNDFICNSLLNKRILIILNLDIVAPPQAKIGNPIGID
AAMSGAAPPQQTIGGHANENARPNAMVDVNPTTGQPKPMGGGSGFGAGANSSWHASAGNG
NPYAGTGNSGIMTKISSNPAGIYRPIQSINPYQNGWTIRGRCTYKSDLRKFQNHRGDGQV
ISFELTDESGSIRVTGFTQHAPIIEQTVHISHIYKVSRGSLKQANEKYNRSTSNFEMTLD
KNSVLEEVDDDGSFMQVKYNFTKIAELGNIEVKGECDVVGVVTAIGPLGEIIIRSTGEPC
NKRSIHITDDSNSSVELTLWRKQAESFLTETDLDRHPIIVIRKASRGDFGGVCLNVNRST
TMELDPVNVTEANKLRHWYDSGGFNAAAVQSVTSGPGGGGKITGPRKSLEVAKIEDVQPA
FTGGSGSTGATATFVTRAYVGFVNTKNDLYYPGDPETKKKLTRSGPDMWSSESSGRTFSD
DEVVWRYIMSMKIMDHSSSTWVSGFDEVGMTMFGKSAQEFRALKENDPTLADQIIEDVTF
RPMLMKVTVKERVWRDEQQIRYTISRAEPLNFAQEGRVLMNEISSYGVM
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgagtcccgaatctgagctctctcgcaatactatcaagcatatctacgtcacttcagac
acatcttcgaatcccgtagtacaaatctgcgagctcaagcgcatctcgcaggcgaacgcc
aacgccagcgccccacctcgctaccgtttggccgtatctgatggcgttcatttccagcaa
gccatgctggccacccagctcaactccctcatcgatgatgggaagatctccctcttctgt
ctcgtccgcctcaatgacttcatctgcaacagcctcctcaacaagcgcatcctcattatc
ctcaaccttgacatcgttgcccccccgcaagccaagattggaaaccctatcgggattgac
gccgctatgagcggcgctgcgcctccacagcagacaatcggtggtcatgccaatgagaac
gcaaggcccaacgctatggtcgatgtcaacccgacgacggggcagccgaaaccaatgggg
ggcggctctgggtttggcgcgggtgctaatagcagctggcatgcttccgctgggaatgga
aacccctacgctggcacgggcaacagcggtatcatgaccaagatcagttccaacccggcg
ggtatttaccgccccatccagagcatcaacccttaccagaacggttggaccattcgtgga
cgttgtacgtataagagcgaccttcggaagtttcagaatcaccgcggcgacggccaggtg
atcagctttgagctcacagacgagtcgggctccattcgtgttacggggttcacccagcat
gctccaattatcgagcagactgttcacatcagtcatatttataaggtgtcacggggatcc
ctcaagcaggcaaatgagaaatacaaccgcagcacgtcgaattttgagatgacgctggac
aagaactctgtcttggaggaagtggacgatgacggctctttcatgcaggtgaagtataac
tttacaaaaattgcagaattgggtaacattgaagtgaagggagagtgtgacgttgtcggg
gtggttacggccattggacctttgggtgaaatcatcatccgcagcactggggaaccgtgc
aacaagcggtcaattcacatcacggatgactcaaattcctccgttgagctgacactatgg
agaaagcaggcagaatcgtttctcacagagactgacctggatcgccacccgatcattgtc
atccgtaaggcttcgcgcggggacttcggcggcgtttgtttgaatgtcaatcgctccacc
accatggaattagatcctgtcaacgtgacagaggcaaataagctgcgacactggtatgac
tcgggcggtttcaatgctgctgctgtgcagtctgtgactagtggtccagggggtggcggc
aagataaccggaccccggaagtctcttgaggtcgcgaagattgaagacgtacagcctgca
ttcacagggggctctgggtctacaggtgctaccgctactttcgtcaccagagcgtatgtc
ggatttgttaacacgaagaacgacctttactatcctggtgacccagaaaccaagaagaaa
ttgacgcgaagcggccctgacatgtggtcgagcgaaagcagcggtcgaacattctctgac
gacgaagttgtatggcgatacatcatgagtatgaaaatcatggaccattcgtcatccaca
tgggtcagcgggtttgatgaggtgggtatgacaatgttcggaaagtctgctcaagaattc
cgtgcgctgaaggaaaatgatcctaccttagctgatcagatcattgaggatgtcacattc
cgtccgatgctgatgaaggtcactgtgaaggagcgggtctggagagacgagcagcagatc
cggtacacgatttctcgtgcggaaccattgaattttgcacaagaaggtcgtgtattgatg
aatgaaatttccagctacggagtaatgtaa
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