Chondrus crispus (carragheen): CHC_T00010340001
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Entry
CHC_T00010340001 CDS
T02916
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Putative
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ccp
Chondrus crispus (carragheen)
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccp03019
]
CHC_T00010340001
03041 Spliceosome [BR:
ccp03041
]
CHC_T00010340001
03036 Chromosome and associated proteins [BR:
ccp03036
]
CHC_T00010340001
Enzymes [BR:
ccp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHC_T00010340001
Messenger RNA biogenesis [BR:
ccp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
CHC_T00010340001
mRNA cycle factors
Common to processing body (P body) and stress granule
CHC_T00010340001
Spliceosome [BR:
ccp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
CHC_T00010340001
Chromosome and associated proteins [BR:
ccp03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
CHC_T00010340001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
17321366
NCBI-ProteinID:
XP_005713662
UniProt:
R7Q7M9
LinkDB
All DBs
AA seq
669 aa
AA seq
DB search
MAANGVEDVTAAAAKLAIDGDAKHPAPGGAHAPPAGNGPRSGSRYVPPHLRSKMLQSADS
DPGDSAPPVSRPVPNHSNFQNRFGGPPPGQFRGGSGGRGWSDSGPGSRQRTWDDKGPASG
NTKSRWSNDDSPFGNQDDVDDKDIFNGMNTGINFDKYNDIPVEMSGNNCVVAIADFPTSG
LHVRLLKNIKLAKYTTPTPVQKNAIPIIAAGRDLMACAQTGSGKTAAFLVPTIDRMLAMG
APPQPPANQRSSRRRIVYPTGLVLAPTRELASQIYEEAQKFCHQSGILARVVYGGADVRD
QLRQLDRGCDLIVATPGRLVDMVERGRISLECIRFLILDEADRMLDMGFEPQIRQIVDDF
YLPAKGERQTLMFSATFPKEIQQLASDFLEDYIFLAVGRVGSTTDFIQQKVEYCDESSKR
DMVLNLLNTIPGLTLVFVETKRGADSLEDFLIRQQYPATSIHGDRSQTEREDALRSFRSG
RTPIMVATDVAARGLDIPNVTHVINFDLPSDIDDYVHRIGRTGRAGNSGLATALINDKNR
NIVRDLVELLGEAGQDVPPFLTEMSRFVSSSGGRRRNGGNKFGGRDYRKEGGGGGGRSGG
GRSGGGGGGYGGGGYGGGGGGYGGGGYGGGGYGGGGYGGGGGGSGGSGSYGGSGSYGGGG
YGNRGGSGW
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaaatggagttgaagacgtcaccgccgctgccgcaaagctagctatcgacgga
gacgcaaagcatcccgccccgggcggggcgcacgccccgcccgctggcaacggcccacgc
tcgggttctcgctatgtacccccacatcttcgcagcaagatgctgcagtctgcggacagc
gatcctggcgattccgcacccccggtatcccgtcccgttcctaaccactctaactttcaa
aatcgcttcggcggtccgcccccaggccagtttcgaggcggctccggcgggcgtggatgg
tctgactcgggcccagggtctaggcagagaacttgggatgataaaggcccagcgagtggc
aacaccaaaagccgctggagtaatgacgactccccgttcggcaatcaggatgacgtcgac
gataaggatatcttcaatggcatgaatactggtattaactttgacaagtacaatgatatc
cccgtcgagatgtcgggcaacaattgcgttgtagctatcgctgacttcccgacttcgggt
ttgcatgtcaggctattgaagaatattaagctcgcaaagtacaccaccccgactccagtc
cagaaaaacgccatcccgatcattgcagctggtcgcgacctcatggcctgtgcccagact
ggttcagggaagaccgctgctttcctcgtccccacgatcgaccgaatgctcgccatggga
gcccctccgcaacctccggcgaaccagcgcagttctcgccgtcgcattgtctatccgact
ggtttagtcctcgcacccactcgcgaactggcaagccaaatctacgaggaggcccaaaag
ttctgccaccagagtggtattcttgctcgtgttgtgtacggtggtgcggacgttcgcgac
caattgcgtcagctcgatcgtggatgcgaccttatcgtcgccacccctggccgacttgtc
gatatggtcgaaagaggtcgcatttctctcgaatgtattcgcttcctcattctggatgaa
gctgatcgcatgcttgacatgggtttcgaaccccagattcgtcaaattgtcgacgacttt
tatctcccggccaagggcgagcgacagaccctcatgttctcagccacattccctaaagag
attcagcaacttgcgtcagacttccttgaggattatattttcctcgctgttggtcgtgtt
ggttccacgactgactttattcagcagaaggtggagtactgcgacgaatcatcgaagcgt
gacatggttctcaatcttctcaataccatcccaggacttacgctcgtatttgtcgagacc
aagcgcggtgctgattctcttgaagacttcctcattcgccagcagtatcctgccacgtct
attcacggagatcgttcgcagactgagcgcgaggatgcgctgcgttccttccgctctggt
agaactcccattatggttgctactgatgttgccgctcgcggtctcgatattcccaacgtg
acacatgttatcaacttcgatttacctagtgatattgatgactacgtgcaccgcatcggt
cgaactgggcgagctggaaactctggacttgccaccgctctgatcaatgataagaacagg
aacattgtgcgtgaccttgtggaactactaggtgaggcaggacaggatgtcccacccttc
ctgacagaaatgtcgaggttcgtctccagctcaggtggacgtcgtcgcaacggtggcaac
aagtttggtgggcgtgattaccgtaaggagggcggaggtggcggtgggcgcagtggaggt
gggcgatctggaggtggcggaggtgggtacggaggcggcgggtacggaggtggtggcgga
gggtatggaggtggtggatatggtggtggtgggtacggtggaggtgggtatggtggtggt
ggcggtggtagtggtggtagtggttcatatggtggtagtggttcgtatggtggtggtggt
tatggaaatcgaggcggaagtggctggtaa
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