Caulobacter vibrioides CB15: CC_1386
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Entry
CC_1386 CDS
T00049
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ccr
Caulobacter vibrioides CB15
Pathway
ccr03410
Base excision repair
ccr03430
Mismatch repair
ccr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CC_1386
03430 Mismatch repair
CC_1386
03440 Homologous recombination
CC_1386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccr03400
]
CC_1386
DNA repair and recombination proteins [BR:
ccr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CC_1386
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CC_1386
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CC_1386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Peripla_BP_6
Motif
Other DBs
NCBI-ProteinID:
AAK23367
UniProt:
Q9A8G8
LinkDB
All DBs
Position
1536950..1538770
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AA seq
606 aa
AA seq
DB search
MPADGVTDISSSAFLGVERSLSGRAWRERPADLAVVREIQQRHGLIEPLAKALVSRGVTL
EHAEHYLRPTLKALFPDPSLFTDMDRAAEILIDALERGRPTMVFADYDVDGATSAAQLVR
WFRHMGVELPIYIPDRLTEGYGPSPAAFRKIRDGGAELVVTLDCGAAAYDAIASAGEIGL
EVVVIDHHLMREDPPAAAAVVNPNRPGCPSGQGVLAAAGVTFVLLTALNREARKRGLFTE
DRPQPDPRQWLDLVALGEVCDVTQLVGFNRALTALGLRAMGAWANPGLKALFEVGKGSGE
PSVFTAGFILGPRINAGGRVGRSDLGARLLSTDDPLEARALAEELDSLNTERKAVEAAVV
EEAAAMLERGSNFNPDAPVIVVAGDDWHPGVIGIVAGRLRERYRKPVVVIGIDRAANVGK
GSGRSQSGVNLGRAIQAAFEAGLLMAGGGHAMAAGLSIRPEMIPEFRAFLEERLAGEMEA
VGVEAVEVDALVQPRAANRALLDDFQRLAPFGPGNPEPLFALSQVRPERVSALKGGHVRM
DLVGPTGDRIKAISWRSAETPLGQRLLAGGGPLDVVGKLKPDDYMGRNGVQLEIEDAHDP
RARYAD
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccgatggtgtcaccgatatttcctccagcgcctttctgggcgtcgaacgctcg
ctgagcggccgcgcctggcgcgagcggccggccgatctcgccgtggttcgcgaaattcag
cagcgtcatggcctgatcgagcccctggcgaaggcgctggtgtcgcgcggcgtcaccctg
gagcacgccgagcattatctgcgcccgacgctcaaggccctgttccccgacccatcgctg
ttcaccgatatggaccgggcggccgaaatcctgatcgacgcgctggagcgcggtcgcccg
accatggtgttcgccgactatgatgtcgacggcgccaccagcgccgcgcagctggtccgg
tggtttcgccatatgggcgtcgagctgccgatctacatccccgaccgtctgaccgagggc
tatggcccgagcccggcggcgttccgcaagatccgcgatggcggcgctgagcttgtggtc
accctcgattgcggcgcggcggcctatgacgcgatcgccagcgccggagagatcgggctg
gaggtcgtggtgatcgaccaccacctgatgcgcgaggacccgccggccgccgcggccgtg
gtcaatccaaaccggccgggctgcccaagcgggcagggcgtgctcgcggcggccggggtg
acgttcgtgctgctgaccgcgctgaaccgcgaggcgcgcaagcgtggcctctttaccgag
gatcgaccgcagcccgacccgcgccaatggctggacctcgtcgccttgggcgaggtctgc
gacgtcacccagttggttggtttcaatcgcgcgctgaccgccctgggtcttcgggccatg
ggcgcctgggccaatcccgggctgaaggcgttgttcgaagtcggcaaaggctcgggcgag
ccgtcagtgttcacggcgggctttatcctggggccgcgcatcaacgccggcggccgggtc
ggtcgctccgatctcggtgcgcggcttctgtctactgacgatccgctggaggcgcgggcg
ctggccgaagaactcgacagcctcaacaccgagcgaaaggccgtggaggccgccgtcgtc
gaagaggcggcggcgatgctggagcgcggcagcaacttcaatcccgacgcgccggtgatc
gtggtggcgggcgacgattggcacccgggtgtgatcggcatcgtcgcgggtcgcctgcgc
gaacgctatcgcaagcctgtcgtggtgatcgggattgatcgggccgcgaatgtcggcaag
ggctcgggccggtcgcagtccggggtcaatcttggccgggcgatccaggcggcgttcgag
gccggccttctgatggccggtggcggtcacgccatggcggccgggctgtcgattcgtccc
gagatgattcccgagttccgcgcctttctggaggagcgcctggcgggtgagatggaggcc
gtgggcgtggaggccgtcgaggtcgacgccttggtccaacctcgcgcggcgaaccgtgcg
ctgctcgatgactttcagcgtctcgcgccgttcgggccgggtaaccccgaacccctgttc
gcgttgagccaggtgcggccagagcgcgtctcggcgctgaagggcgggcacgtacgtatg
gacctggtcggtccgacgggcgaccgcatcaaggcgatcagttggcgaagcgccgagacc
ccgctggggcagcgattgctggcggggggcggacctctcgacgtcgtcggcaagctcaag
cctgacgactacatgggccgaaatggcgtgcagctcgagatcgaggacgcccacgatcct
cgcgcgcgttacgcggactag
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