Caulobacter vibrioides CB15: CC_3707
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Entry
CC_3707 CDS
T00049
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ccr
Caulobacter vibrioides CB15
Pathway
ccr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ccr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CC_3707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccr03400
]
CC_3707
Enzymes [BR:
ccr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CC_3707
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CC_3707
DNA repair and recombination proteins [BR:
ccr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CC_3707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
IBR
Motif
Other DBs
NCBI-ProteinID:
AAK25669
UniProt:
Q9A259
LinkDB
All DBs
Position
complement(3962206..3963153)
Genome browser
AA seq
315 aa
AA seq
DB search
MTSLGRAFYILSPLLARDTPAVIRRRFPVPELPEVETVRRGLEPVLSGARLSSVRANRPD
LRFPLPDGFVQRLTGARILRLDRRAKYILAPLDRGDTLVMHLGMTGRFEIAAPEGTVRPG
DFAREVTPDDKHAHVVFQTEDGATVTYFDPRRFGFMDLIPTDRVSHHAWFAAMGPEPLGE
GFDARTLEKAFANRKQGPKTLLLDQRTVAGLGNIYVCEALHRSGISPFKPSGNIAKKRLT
PLTAAIKDVLAEAVEVGGSTLKDFAAADGALGYFQHRFRVYDREGEPCPTPACKGVIARE
VQAGRSTFFCPVCQV
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgacgtctttgggccgggctttctatatcttaagtccgctattagcccgcgacacgccc
gccgtcatccgccgaaggttccctgtgcccgaattgcccgaagtcgagaccgtccgccgg
ggcctggagcccgtcttgtccggggcgcgtctttccagcgtccgcgccaaccggcccgac
ctgcgcttcccgctgcccgacggcttcgttcagcgactgaccggcgcgcggatcctgcgg
ctggatcgccgcgccaagtacatcctggcgccgctcgaccggggcgacaccctggtgatg
cacctgggcatgaccggccgcttcgagatcgccgcgccggagggaacggttcgtcccggc
gacttcgctcgcgaggtcacgcccgatgacaagcatgcccatgtcgtgttccagaccgag
gacggcgcgacggtcacctatttcgacccgcgccgcttcggcttcatggacctgatcccg
acagatcgcgtcagccaccatgcctggttcgccgccatgggccccgagccgctgggcgag
ggtttcgacgcccgcacgttggaaaaggccttcgccaatcgcaagcaggggcccaagacc
ctgcttctggaccagcgcaccgtcgccggactgggcaacatctatgtctgtgaggccctg
caccgatccggtatctcgcccttcaagccgtctggaaacatcgcgaagaagcggctgact
ccgctcaccgccgcgatcaaggacgttctggcggaggcggtcgaggtgggcggctcaacg
ctgaaggatttcgcggccgccgacggcgcgctgggctatttccagcaccgcttccgcgtc
tacgaccgcgagggcgagccgtgcccgacgccggcgtgcaagggcgtgatcgcccgggag
gtccaggcgggacgttcaaccttcttctgtccggtctgtcaggtctga
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