Colias croceus (clouded yellow): 123691356
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Entry
123691356 CDS
T08651
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ccrc
Colias croceus (clouded yellow)
Pathway
ccrc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccrc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123691356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccrc03041
]
123691356
Enzymes [BR:
ccrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123691356
Spliceosome [BR:
ccrc03041
]
Complex C
Other components
Step II factors
123691356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
Flavi_DEAD
nSTAND3
AAA_30
PhoH
TsaE
Motif
Other DBs
NCBI-GeneID:
123691356
NCBI-ProteinID:
XP_045491650
LinkDB
All DBs
Position
4:1631048..1640057
Genome browser
AA seq
1257 aa
AA seq
DB search
MDELAKLEHLSLVSKVCTELDNHLGINDKDLAEFIIDLADKNPNFDGFKKSLIENGAEFS
DSFMTNLLRIIQHMKPAPAQAEPSKEVKSSNPLANKFPGLAIPNEKPPHFSSDDESESED
KKGKRITTKDIFKNENKSDSAKDDVVDQAMAELEALAPSNATVSDAKKRERSKDRKEDVG
KRATSKERRSRRSRSRNRRSRSRDKRSVSHSRDKRSRSRDKRSRSRDRRSRSRDRRRRSR
SRHRRSRSRDRHRRSRSRGRRSKSRSRSRGRDRDYKQRDRDYGKKPKKRSPEVELSDDPE
PGKIYSGRVANIVPFGCFVQMEGLKKRWEGLVHISQLRAEGRVTNVSDIVSRGDKVKVKV
LSVTGQKVSLTMKDVCQDTGKDLNPTSHAHLEAEREGRNPDRPPPAATVLAGLQNGLDPD
EDSSRKRVTRISSPERWEIKQMISSGVIDKSELPDFDEETGLLPKDEDGEADIEIELVED
EPPFLQGHGRALHDLSPVRIVKNPDGSLAQAAMMQSALAKERREQKMLQREQEMESVPTG
LNKNWIDPLPESDGWALAANMRGTGITTQDLPEWKKHVIGGKKSSFGKKTNLSLLEQRQS
LPIYKLRDELIKAISDNQILIVIGETGSGKTTQITQYVAECGLAARGRVACTQPRRVAAM
SVAKRVAEEFGCRLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLMDLDLKTYSVIML
DEAHERTIHTDVLFGLLKQAVQKRPELKLIVTSATLDAVKFSQYFFAAPIFTIPGRTFPV
EVLYTKEPETDYLDASLITVMQIHLREPPGDILLFLTGQEEIDTACEILYERMKSLGPDV
PELIILPVYSALPSEMQTRIFEPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKV
YNSKTGMDSLVVTPISQAAAKQRAGRAGRTGPGKTYRLYTERAYRDEMLPTPVPEIQRTN
LATTVLQLKTMGINDLLHFDFMDAPPVESLIMALEQLHSLSALDSEGLLTRLGRRMAEFP
LEPNLSKILIMSVALQCSDEILTIVSMLSVQNVFYRPKDKQALADQKKAKFNQPEGDHLT
LLAVYNSWKNNKFSNAWCYENFVQIRTLKRAQDVRKQLLGIMDRHKLDVVSAGKNTVRVQ
KTICSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMRE
VTTIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVRRRRN
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atggatgaattagcaaaattagaacatctttctctggtgtcgaaagtttgtacagaatta
gataaccatttaggaataaacgacaaagatttggctgaatttattatcgatttagctgat
aaaaatccaaacttcgatggttttaagaaatcactcattgaaaatggagctgagttttct
gattcatttatgacaaatttactacgtattatacaacatatgaaaccagcgcctgctcaa
gctgaaccaagtaaagaagtaaaaagctcaaatcccttggctaacaaatttcctggatta
gcaatccctaatgaaaaaccaccacacttctcctctgatgatgaaagtgaaagtgaagac
aaaaagggtaaaagaatcacaactaaagatattttcaaaaatgaaaataaatcggattct
gcgaaggatgatgtagttgatcaggcaatggctgaattagaggctttggctccatccaat
gctacagtttctgatgcgaaaaagcgcgaacgtagcaaagatagaaaagaagatgtaggt
aagagagcaacttctaaagaaagacgtagcagacgcagtagaagcagaaatcggcgaagt
agaagtagggacaaaagaagtgttagtcatagcagagataagaggagtagaagtagagat
aagagaagtaggagtagagatagaagaagtcgaagtcgggacagaaggagaagatccagg
agtcgtcatcgcagatccagatccagggatagacacaggagatcaaggtcaagaggaaga
agatctaaatctagatctcgatctaggggacgagatagagattacaagcaaagggataga
gattatggtaaaaaaccaaagaagagaagtcctgaagttgaattgagtgacgatcctgaa
cctggtaaaatttacagcggcagggtagcgaacatagtgccatttggctgttttgtccaa
atggaaggattgaagaagaggtgggagggtcttgttcatatctcacagttaagagctgaa
ggaagggtcactaatgtttctgatattgtatcgagaggagataaagtcaaggtgaaagtt
ctgtcagtgactggtcagaaagtatcactaactatgaaagatgtctgtcaggatacagga
aaagatttgaatcccacttctcatgcacatttggaggctgaacgcgaaggccgtaatcca
gataggcctccaccagccgccactgtgctcgcagggctccagaacgggctcgaccctgat
gaagattccagtaggaaacgcgtcacgagaatctcaagtccggagagatgggagattaaa
cagatgatatcatcaggagtaatagacaagagcgagttgccagacttcgacgaggagact
ggtctgctaccgaaagacgaagatggtgaagctgacatcgaaatagaactagtcgaagac
gaaccacctttcctccaaggccacggtcgagcattacacgatctatccccagttagaata
gtaaagaaccctgatgggtcattagctcaagctgctatgatgcaatctgctctagcgaag
gaaagaagagaacagaagatgctacaaagagaacaagagatggagagtgttccgactggt
ctgaataagaactggatagatccgttgccagaatccgatggttgggctttagcagccaat
atgagaggcacaggcattacaacacaggacttgccagaatggaagaagcatgttatcgga
ggcaagaaatcgtcgttcggtaaaaagactaatttgtcgctgttggagcagaggcagtcg
ttgcctatttataaactgagggatgaattaattaaggccatatcagacaaccagatcctc
atagtaatcggtgagactggttccgggaagacgacccaaatcacccaatacgtagcggaa
tgtggcttagcagctcgaggtcgggtggcctgcacccagcccagaagagtggctgctatg
tctgtggccaagcgagtggcggaagagtttggatgtagattgggccaggaagtcggatat
actattcggtttgaagattgcacctcgccggagactgttatcaagtacatgacagacggt
atgttgctccgcgaatgtctcatggacctcgatcttaagacctattccgttatcatgttg
gacgaagcccacgagcgaacgattcacacagacgtactcttcggtctgctcaaacaagct
gtccaaaaacgaccagaattaaagctaattgtcacctccgcaacgctcgatgccgtcaaa
ttttcacaatatttcttcgctgcaccaattttcacgataccaggcagaacattccctgta
gaagttttgtatacgaaagaaccagaaacggattatttggatgcgtctttgatcactgta
atgcagatacatttgagagaacctccaggggatattcttctgttcttaacgggtcaagag
gagattgacacggcttgtgagattttatacgaaagaatgaagtcccttggtccagatgtg
ccagaactgattattttgcctgtgtactccgcgctaccatcggaaatgcagaccaggatt
tttgaaccagctccccctggttctagaaaagtggtgatagctacgaatatagcagaaacg
tcgttaacaatagatggtatttattacgtggtcgatccagggtttgtgaaacagaaggtg
tacaattcgaagacgggaatggactcgctggttgttactcctatttcgcaggcagcagca
aaacaacgtgcgggtagagctggtcgcacggggccgggcaaaacgtaccggttatacacg
gaacgcgcctaccgagatgagatgttgcccacacccgtgcctgagatacagcggaccaat
ctcgccaccactgtgttacaactaaagacgatgggcatcaacgacctgctgcactttgac
ttcatggacgcaccacctgtagagtctctcatcatggcgctggaacagctgcactcgctg
tcagctctggattctgaaggtctactcaccaggcttggacggaggatggctgaattcccg
ctagaaccgaatctatcaaagatcctcatcatgtccgtagcactacaatgctctgacgaa
atcttaaccatagtgtcaatgctgagtgtgcaaaacgtgttctatcgaccaaaggataaa
caagctctcgcagaccagaagaaagccaaattcaatcagccagaaggagatcatttgacg
ctccttgcggtttataacagttggaagaacaataagttctcgaacgcgtggtgttatgag
aacttcgtgcaaattaggaccctgaagcgggcgcaagatgtcaggaaacagttgctgggg
attatggataggcacaaactcgacgtagtatcagcgggcaagaacacagtgcgcgtacag
aagacgatttgctctggattcttcagaaatgccgcgaaaaaggacccgcaggaaggatat
aggacgttggtggacagccaagtggtgtacatacacccgtctagtgcactgtttaataga
caacctgagtgggttatctaccacgaactagtgcaaacgacgaaagagtacatgcgtgaa
gtaacaacgatcgatcccaagtggctcgtcgaattcgctccagcgttcttcaagttctcg
gacccgactaaattgtccaaattcaagaaaaaccaacgactcgaacccttgtataataag
tatgaagaacctaacgcgtggagaatatccagggtgcgcagacgcagaaattaa
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