Colias croceus (clouded yellow): 123692022
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Entry
123692022 CDS
T08651
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
ccrc
Colias croceus (clouded yellow)
Pathway
ccrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccrc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123692022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccrc03019
]
123692022
Messenger RNA biogenesis [BR:
ccrc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
123692022
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
123692022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
123692022
NCBI-ProteinID:
XP_045492604
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All DBs
Position
1:9806786..9809289
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AA seq
307 aa
AA seq
DB search
MAGVLLSQTEKTYILHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILV
GVKTEIDVPNPDKPGLGKIEFFVDCSANATPEFEGRGGEQLASTISNMLQRAYQSSQAFN
LTQLCIFEGKQCWKLYIDILILECGGNLCDAVSLAVKAALFNTRIPFVKAALMDGGNVDL
QLSDDPFDSKNLNVGTAPLLVTLCKIGDKCVVDPSAEEEKCSVVSLIVGVSGNPRYYTTN
ASDTELKSKCTTIGMLGAGSVAPPTLKEAVSQGIIAAKCLDEALGKALLREKAETINYKK
ESYGFLK
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagtattgctaagtcagactgaaaaaacatatatacttcatggggtacaggaa
gacttccgctctgatgggagatctaatattgactatagacccatggaattggaaacagac
gtagtcagtcatgcaagtggctcggcgcgtttacggttggcaaatacagatattctggtg
ggtgtaaaaactgaaattgatgtccctaatcccgacaaacccggtctgggaaaaattgaa
ttcttcgtagattgttccgcaaatgccacaccagaatttgaaggaagaggtggagaacaa
ctcgcaagcactatatcaaacatgttacaaagagcgtaccagtcttctcaagcatttaac
ttaacgcaattgtgtatatttgaaggaaaacaatgttggaaactatatattgatatttta
atattagaatgtggaggtaacttatgtgatgctgtgtccttagctgtaaaagccgcacta
ttcaatacaagaataccttttgttaaagcagctctcatggatggaggaaatgtagattta
caactatctgatgatccatttgatagcaagaatttgaatgttggcactgcaccattgctg
gtcacactatgcaaaattggtgataaatgtgtagtagatccatcagctgaagaagaaaag
tgtagtgttgtgtcacttattgttggtgtatctggcaatcctagatattacactacaaat
gcatcggacactgaattaaagtctaaatgtacgacgattggcatgttaggtgcaggcagt
gtggccccaccaacattgaaagaagctgtcagccagggaatcattgcagccaaatgttta
gatgaagcacttggaaaagctcttttacgagaaaaggcagaaacaatcaattacaaaaaa
gaatcatatggatttctcaaataa
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