Colias croceus (clouded yellow): 123694141
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Entry
123694141 CDS
T08651
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ccrc
Colias croceus (clouded yellow)
Pathway
ccrc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccrc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123694141
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccrc03041
]
123694141
03009 Ribosome biogenesis [BR:
ccrc03009
]
123694141
Enzymes [BR:
ccrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123694141
Spliceosome [BR:
ccrc03041
]
Complex A
U1 snRNP components
U1 related factors
123694141
Complex B
123694141
Ribosome biogenesis [BR:
ccrc03009
]
Eukaryotic type
Pre-60S particles
Helicases
123694141
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
SAM_DrpA
Motif
Other DBs
NCBI-GeneID:
123694141
NCBI-ProteinID:
XP_045495416
EnsemblRapid:
ENSCEUG00000018792
LinkDB
All DBs
Position
9:5595731..5603586
Genome browser
AA seq
830 aa
AA seq
DB search
MQYNSFHNQHPIFRPRLDRNEQFGKMPFFNGPPDFGGPKNFAPRNNMGNKNFRPRNDYNG
VRPEFNGHKNENGNQNDFGGPKEYRPRNNYNNNQMQKKEYEGDKASGSNMQFYNSKNDFG
GPKQHSFQKNGFAPKNYNNPNGSPTNAQQQQYIQKKVFNSNNGQNQDFNDRKLQSRKAKH
PGDGLIKPVWDMGQLETIQKNFYKPHANVESRTDDEVQRFRATKEITVSGNNVPRPNQKF
DEGNFPDHILNTIKEQGWEEPTGIQAQGWPIALSGRDMVGIASTGSGKTLAYMLPAAVHI
VHQQRIQRGDGPIALILAPTRELAQQIQSVAQAYSARGCIRNTCLFGGSPKGPQARDLER
GVEIVIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVL
MWSATWPKEIQALAEDFLTDYIKVNIGSLNLSANNNIKQIIEVCEEHEKEMKLSNLLKEI
ASEKDNKVIVFVETKKKVDDIARAVRRNGHKALAIHGDKSQPERDAVLTEFRNGATTILI
ATDVAARGLDVEDVKFVVNFDYPNSSEDYIHRIGRTGRCQQSGTAYTYFTSGDARQARAL
VGVLRETGQNPPAKLNEMARTNNNSSGRNRWQQRKENNSGSSSPRQKSNQWNNKMANGSS
DDGQNTFQAQNFTQQPPRFSNQNQNNQGYRQNNYQKPVPFPSPNVFDSMGTYQGGYNNGY
QNAYNNQNGYGQQRPYNNQRNNGQQYRGNNNSGNKSSGSGSSYGSPPPHFAATAHYPQMH
PHHQEMLGGKFYGGGVGGGGPCGYQAAVGAGVPYPHLPPGPLLYAAPVQQ
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgcagtacaacagctttcataatcaacatccaattttcagacctcgcttagaccggaat
gaacaattcggtaagatgccttttttcaatggaccccctgactttggaggccctaagaac
tttgcccccagaaataatatgggcaacaaaaattttaggcccagaaatgattacaatggt
gtaaggccagaatttaatggccacaaaaatgaaaatggtaatcagaacgattttgggggt
ccaaaagaatatagacccagaaacaattataacaacaatcagatgcaaaagaaagagtat
gagggtgataaagcatctggaagtaatatgcagttctataactctaaaaatgattttggt
ggtcctaaacaacatagcttccaaaagaatggatttgctcccaaaaattacaataatcca
aatggatctccaacaaatgctcaacaacaacagtatattcaaaagaaagtttttaattcc
aacaatggacaaaatcaagatttcaatgaccgcaaattacagagcagaaaagccaaacat
cctggtgatggattaattaaacctgtttgggacatgggacaacttgaaacaattcaaaag
aacttctataaaccacatgccaatgttgaatctcgtactgatgatgaggtccaaaggttc
agggctactaaggaaattactgtaagtggtaataatgtgccaagaccaaatcagaagttt
gatgaaggcaatttcccagaccatattttgaacactatcaaggaacaaggttgggaagaa
cctactggtatccaagcacagggatggcctattgctctatctggtcgtgatatggttggt
attgcatccactggatctggaaagacgctggcatacatgctacctgcagcagttcatatt
gttcatcaacagaggatccagcgaggtgatggtcctattgctctcattctggcacctacc
cgtgaattggcgcagcaaattcaatcagtagcccaagcttacagtgcccgtggatgcatc
agaaacacttgcctctttggtggttcccccaaggggccccaagctcgagatttagaaaga
ggtgttgagattgtcattgctacaccaggacgtctgattgatttcttggaaaggggcaca
accaacttgcgccgttgcacttatttggtccttgatgaagctgacaggatgttagacatg
ggttttgaacctcaaatccgtaaaatcattgaacaaatccgccctgatcgtcaagttttg
atgtggtctgcaacctggccaaaagagattcaagctttggctgaagatttcttaactgac
tacattaaagtcaacattggatctcttaacctgtctgccaacaacaacataaagcaaatc
attgaagtttgtgaagaacatgagaaggaaatgaagctcagtaacctactgaaagagatt
gcatctgaaaaagacaataaagtcattgtgtttgtagagaccaaaaagaaagttgatgat
attgcgcgtgccgtgcgtcgtaacgggcataaagctttggccatccatggggacaagtcg
caaccagaacgagatgctgttctcacagaattccgtaatggagctacaaccatacttatt
gccactgatgtagctgctcgtggattagatgtggaagatgtcaaatttgttgtcaacttt
gattaccctaattcctctgaagattatattcatagaattggtcgcactggacgttgccag
cagtctggtacagcttacacctacttcacaagtggagatgcccgccaagctcgcgctctc
gttggagtgctccgggaaactggacaaaatccacctgcaaaattgaatgaaatggcaaga
accaacaacaacagctctggccgcaaccgttggcaacagcgtaaggaaaacaacagtgga
tcaagctcaccacgccaaaagagcaaccagtggaataacaagatggctaatggatccagt
gatgacggacagaatactttccaggcacagaactttacacaacaaccaccacgcttctca
aaccagaaccagaataatcaaggctacagacaaaacaattaccagaaaccagtaccattc
ccaagtcccaatgtatttgactcgatgggcacataccagggcggttataacaatggttat
cagaatgcatacaacaaccaaaacgggtatggtcaacaacgcccatacaacaaccagcgt
aacaatggccaacaatatcgcggtaataacaacagtggcaacaagtcgagtggatcgggc
tcctcctatggatcaccgcctcctcactttgctgctactgctcactatccacaaatgcat
cctcatcatcaggaaatgcttggaggcaagttctacggcggcggtgtcggtggaggaggc
ccctgcggataccaggctgcagtcggcgccggagtgccctacccacacctacccccaggc
cctctgctatatgctgctcctgttcaacaataa
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